RefSeq NC_007770
DoriC accession number pORI00000146
OriC length 220 nt
OriC AT content 0.7182
The location of oriC region 2462..90 nt
Browse in NCBI
OriC map
OriC sequences
TTTACCCCTCCTAATTTAGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCAAAGATATTAAACATCATATTAACGTTGATATGACAGTGTTTTTATGTATTTTTATGCGTGAAAGAAAATTTGACATAAAAAAGCTCCAGTAATAAGATTGAAGCATCTACTCATCAAATTAATACTGGAGGTCTTTTTAT
TTTACCCCTCCTAATTTAGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCAAAGATATTAAACATCATATTAACGTTGATATGACAGTGTTTTTATGTATTTTTATGCGTGAAAGAAAATTTGACATAAAAAAGCTCCAGTAATAAGATTGAAGCATCTACTCATCAAATTAATACTGGAGGTCTTTTTAT
AT-rich region
The information of repeat sequences

Motif MSCTCC

StartP-valueSite
63.69e-05TTTACCCCTCCTAATTTAGGA
1621.32e-04GACATAAAAAAGCTCCAGTAATAAGA

Motif AACGAG

StartP-valueSite
391.36e-04ACGAGTTGAAAACGAGTTTCTTCTTG
281.36e-04AGGAATTTGAAACGAGTTGAAAACGA

Motif CWTCTWSTC

StartP-valueSite
1841.74e-05AAGATTGAAGCATCTACTCATCAAATTAA
481.74e-05AAACGAGTTTCTTCTTGTCTTGATACTAT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000146 100.0 220 0 0 1 220 1 220 0.0 407
pORI00000231 83.71 221 31 5 1 220 1 217 0.0 204
pORI00000275 86.957 184 15 7 1 179 1 180 0.0 198
pORI00000204 82.589 224 29 10 1 220 1 218 0.0 189
pORI00000005 84.0 200 25 7 23 220 195 1 0.0 185
pORI00000100 81.696 224 32 9 1 220 1 219 0.0 178
pORI00000025 85.475 179 17 9 1 174 1 175 0.0 178
pORI00000207 86.667 165 15 7 1 161 1 162 1.4013e-45 176
pORI00000233 81.522 184 25 7 1 179 1 180 1.49e-35 143
pORI00000278 98.387 62 1 0 1 62 1 62 1.51e-25 110
pORI00000202 98.387 62 1 0 1 62 1 62 1.51e-25 110
pORI00000277 98.305 59 1 0 1 59 1 59 7.02e-24 104
pORI00000279 100.0 45 0 0 23 67 241 197 9.15e-18 84