DoriC

RefSeq

NC_009783.1

Accession number

NC_009783.1

DoriC accession number

ORI92220051

OriC length

469 nt

OriC AT content

0.628998

The location of oriC region

415998..416466 nt

Browse in NCBI

OriC map

OriC sequences

gidAGAACTGACCTCAGGTATTCAAAGGATTTAATGAACAGATAAAAAAGAGCGGTATTTTACCTTTTTTCTGTGTGAGAGAGAATCGTTTTCTCGCTTTTCAAATTTTAGTCCCTAAGACTATATATATAAGATCTATATATATGATCTTTTATTGGATCTATTATTAGGATCGCACGTTTCTGTGGATAACTAGAAAATGATCAACAAGATCATGGATCTTCTTTGGAACATATCTTGTGATCATGGCTTGATCAGATCGAGGATTTCCTGAGATCAAAATGCGGGGTTATGCACAGGGGTAAAAAAGGATCTAAGTTGTTCTTTGGATAACTAAAGGAAAATCACTGGATCCTACCTGACTTATCCACAGATGGTTTGGGTGTTTTTTGAGCGGTTGAACAAGATTTTTTGAGGGGAGTTATTCACAATGGGGAGAAACAGAGCCGCAATGCGACTCTGTGATAGAGGAAmioC

gidaGAACTGACCTCAGGTATTCAAAGGATTTAATGAACAGATAAAAAAGAGCGGTATTTTACCTTTTTTCTGTGTGAGAGAGAATCGTTTTCTCGCTTTTCAAATTTTAGTCCCTAAGACTATATATATAAGATCTATATATATGATCTTTTATTGGATCTATTATTAGGATCGCACGTTTCTGTGGATAACTAGAAAATGATCAACAAGATCATGGATCTTCTTTGGAACATATCTTGTGATCATGGCTTGATCAGATCGAGGATTTCCTGAGATCAAAATGCGGGGTTATGCACAGGGGTAAAAAAGGATCTAAGTTGTTCTTTGGATAACTAAAGGAAAATCACTGGATCCTACCTGACTTATCCACAGATGGTTTGGGTGTTTTTTGAGCGGTTGAACAAGATTTTTTGAGGGGAGTTATTCACAATGGGGAGAAACAGAGCCGCAATGCGACTCTGTGATAGAGGAAmioc

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif SCKGAGTTATKCACAG

Start	P-value		Site
354	1.95e-09	CTGGATCCTA	CCTGACTTATCCACAG	ATGGTTTGGG
280	5.89e-09	AGATCAAAAT	GCGGGGTTATGCACAG	GGGTAAAAAA
412	4.74e-08	GATTTTTTGA	GGGGAGTTATTCACAA	TGGGGAGAAA
8	5.58e-08	GAACTGA	CCTCAGGTATTCAAAG	GATTTAATGA

Motif GDWRAAMAAGAKC

Start	P-value		Site
198	2.57e-07	ACTAGAAAAT	GATCAACAAGATC	ATGGATCTTC
37	7.70e-07	TTAATGAACA	GATAAAAAAGAGC	GGTATTTTAC
431	3.22e-06	TTCACAATGG	GGAGAAACAGAGC	CGCAATGCGA
298	4.15e-06	ATGCACAGGG	GTAAAAAAGGATC	TAAGTTGTTC
393	4.31e-06	TTTTTGAGCG	GTTGAACAAGATT	TTTTGAGGGG

Motif TCTTTGGATMA

Start	P-value		Site
319	1.98e-06	TCTAAGTTGT	TCTTTGGATAA	CTAAAGGAAA
219	2.88e-06	TCATGGATCT	TCTTTGGAACA	TATCTTGTGA
178	5.17e-06	ATCGCACGTT	TCTGTGGATAA	CTAGAAAATG
341	7.30e-06	TAAAGGAAAA	TCACTGGATCC	TACCTGACTT
232	1.13e-05	TTGGAACATA	TCTTGTGATCA	TGGCTTGATC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92220051	100.0	469	0	0	1	469	1	469	0.0	867
ORI93020108	84.244	476	59	15	1	469	477	11	0.0	449
ORI10020013	80.303	396	62	13	1	387	468	80	0.0	285
ORI10020017	80.051	396	63	13	1	387	1	389	0.0	279
ORI94030347	79.798	396	64	13	1	387	468	80	0.0	274
ORI90020046	97.143	35	1	0	154	188	231	197	4.44e-10	60