DoriC

RefSeq

NZ_CP019154.1

DoriC accession number

aORI10010313

OriC length

930 nt

OriC AT content

0.5301

The location of oriC region

2965329..0 nt

Browse in NCBI

OriC map

OriC sequences

CCTATCCTCCCGCCGCCCGGAGTCGTCCGGTATGGCGGCTCTGCCCGTAAAAGATAGGCGAATTCACTTAAGCCTACGTCAGACATTAGTCCCTATTCTGACATGGTGGGGCATAGCACAGATCAGCGTGCGGGCGTTGGGACGGAGACGAGCGAAAAGGGGGGACTATTCGAGTCAGCCCATCCTGACCCACGCGAGATGTATGTGGGTGTACCAACACAGCCCCCCACCCCTTCGTTTCAGGTGGAACGCCGCACACCCCTGGGGAGGGGTGGGAGACTTATCGGTCAAATTGGGAGCGCACTAGTTCTTCAGATCAGCGCGATACGTGATTTCACTAGCTAGAGCGGTCTAGACACTAGAAAACTGAACACTAACTCCTACTGACTATCTGTTTTATCTGGTGCGGGTTTGGTTTACGATATACCATATTAAATCTTTTCTCTTGTTACAGTACATTGTCGGCCTCCCTCCCCCCTCCCCCCGGGCCTGCTTCTAGTTCCACTGGAAACGAAGGGGTGGGGGGGTTACCCTGTTGGAGTCGGGTTCCGCTGCAAGCACCGGCTCCTCATGCGCTACCCTCATATTCACACAGCGTACCCGCTCCCGAAACTGCACCACCATTCTCTTACTCTCCGATCACTAGCTGCTGTATACTGCCCGTTTCACCCCAGTGAGATCGAAGCTATATTTCCCTTTATGACAACAGTACTCATGCGACAGAAAATATAAATATATCAACACACATCTTTCACAGGTGGTGTACCGAAATATTTAATATCGAATCACGGTACGGTTCATGTGGTTCAACTGGACACACCGGAGAGCGCTGATGCTCACTAACAACGGCACTGACGCACTCCTCGCTCCCTCTGTTCCGGTGTCTCCAACTCTCTCCACACGAAACGAAGGGGACCCCCTCGATCGACT

ORB AT-rich region

The information of repeat sequences

Motif CATCTNGHTCCACDSGAVACGHAGGDG

Start	P-value		Site
493	4.83e-15	CCCGGGCCTG	CTTCTAGTTCCACTGGAAACGAAGGGG	TGGGGGGGTT
888	2.29e-12	CCGGTGTCTC	CAACTCTCTCCACACGAAACGAAGGGG	ACCCCCTCGA
799	3.66e-11	CGGTACGGTT	CATGTGGTTCAACTGGACACACCGGAG	AGCGCTGATG
181	9.58e-11	CGAGTCAGCC	CATCCTGACCCACGCGAGATGTATGTG	GGTGTACCAA

Motif AGATVAGCG

Start	P-value		Site
314	3.28e-06	CTAGTTCTTC	AGATCAGCG	CGATACGTGA
120	3.28e-06	GGCATAGCAC	AGATCAGCG	TGCGGGCGTT
52	2.10e-05	TGCCCGTAAA	AGATAGGCG	AATTCACTTA
146	2.74e-05	GTTGGGACGG	AGACGAGCG	AAAAGGGGGG

Motif KARAHWHTWRAWAWMKVAWCA

Start	P-value		Site
723	4.43e-11	TCATGCGACA	GAAAATATAAATATATCAACA	CACATCTTTC
768	2.69e-10	GTGGTGTACC	GAAATATTTAATATCGAATCA	CGGTACGGTT
353	1.72e-09	TAGAGCGGTC	TAGACACTAGAAAACTGAACA	CTAACTCCTA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010313	100.0	930	0	0	1	930	1	930	0.0	1718
aORI10010127	82.353	952	138	22	1	930	1	944	0.0	800
aORI10010293	80.042	942	158	24	1	924	1	930	0.0	671
aORI10010246	79.958	943	159	23	1	924	1	932	0.0	667
aORI10010185	79.958	943	159	23	1	924	1	932	0.0	667
aORI10010150	100.0	32	0	0	221	252	803	772	2.03e-10	60
aORI10010171	100.0	31	0	0	221	251	528	498	7.28e-10	58
aORI10010393	96.875	32	1	0	221	252	669	700	9.42e-09	55
aORI10010275	100.0	29	0	0	223	251	651	623	9.42e-09	55
aORI10010216	100.0	28	0	0	224	251	452	479	3.39e-08	53
aORI10010162	100.0	28	0	0	224	251	197	224	3.39e-08	53