DoriC

RefSeq

NC_013967.1

DoriC accession number

aORI10010162

OriC length

1113 nt

OriC AT content

0.4268

The location of oriC region

2846902..257 nt

Browse in NCBI

OriC map

OriC sequences

TTGTTACTTTGGGCGTACACGTGCGTAACTCGAACGGATACCGAGCATGACTCCGGAGTACCGCAGTGTCTCTCGAACACGACGAGCGTTCTGAAGCCGCCGCGCCGACCTCCCCACAGTCTGTCCTCGCCGCAGTAGCCGTGATTCTGATATAGTGACACGTGCCGCGGGGACGTGAACCACTCGCAAGGCAACACCCCCACCCCTTCGTTTCAGGTGGAACGGGCCGAAGGGGTGGGTGGGGGGAGACCGCTAGACGGCGGTCGGATGTTAATTGAATAGAGAGGGTGAGTAATATTATCCATTTTCTCTCTACTACGGGTTTGATATGCAAATATCTGTGATAAAACCACCGCTATACAAAGACTACCGAACCCCCTCCCCTCCTGTTCGCGGCTCCACCTGAAACGAAGGGGTGTGGGGGAACCGAGACGCAGGGGTTTCCCGTCGAACTGGAGAACGACAGTTAATTACAAGAGAAATCGAGACGTTACACAAGGTCAATACTCGCTCTACTACCCGAATTCGTCCAAATCGTTATTCGGACATCTCCACGCGAAACGAAGGGGTTACTCCCATCGAATTTTCTGTCGGGGACACATCGCACGTCGAGTTCCACTCCAACGACGCCCGTTGGTCAGTCACCGCCACCGCTCAGTTACTGTCGGTACTCGGTCTCCGACACCCATCCGGCTACCCACCATCGTTCAGTCACGCTGCCGCGCAGTTGCCGGCGCAACTCGTTACCCACCACTCGGCCGACTCGACCTGTTTCGACTCGAGCCGAGCCGACTTTCCGACGCGGCTCGATTCGCCCGTTCGCCATCTGGTTCGTCTCCCAGCGACCGCCGGTACTGACGACATCGCCGGGGGAGCGAAACTGATACGCGCGGGTTCTCGTGTTGAAACGGTCCCGCCCGGCCGAGTTCCGGTCGAACGGCGGCGGACGGGTCGGAGAAGTAAGGTTTTTGTACCAACTGTTCGTTTGGTTCCTTTGCATCATCTGGAATCGCCTTCTTCGGCGTGATGCGTAAATGCCGACTATCACCGGCTTCACGCACCCTATACGCCGCCGCGGGCGACTATTCCACTTGAAACAAAGGGGTATTCACG

ORB AT-rich region

The information of repeat sequences

Motif AMCYGAAACGMAGGGGT

Start	P-value		Site
401	4.36e-11	TCGCGGCTCC	ACCTGAAACGAAGGGGT	GTGGGGGAAC
554	1.21e-09	GGACATCTCC	ACGCGAAACGAAGGGGT	TACTCCCATC
1090	1.68e-09	CGACTATTCC	ACTTGAAACAAAGGGGT	ATTCACG
425	5.14e-09	GGTGTGGGGG	AACCGAGACGCAGGGGT	TTCCCGTCGA
879	1.99e-08	GGGGGAGCGA	AACTGATACGCGCGGGT	TCTCGTGTTG

Motif AKTTTCTSTCGR

Start	P-value		Site
583	2.26e-07	CTCCCATCGA	ATTTTCTGTCGG	GGACACATCG
657	7.14e-07	GCCACCGCTC	AGTTACTGTCGG	TACTCGGTCT
304	1.11e-06	AATATTATCC	ATTTTCTCTCTA	CTACGGGTTT
65	1.46e-06	GGAGTACCGC	AGTGTCTCTCGA	ACACGACGAG
925	2.68e-06	CGCCCGGCCG	AGTTCCGGTCGA	ACGGCGGCGG

Motif GTTATTCDRATAT

Start	P-value		Site
537	1.27e-07	CGTCCAAATC	GTTATTCGGACAT	CTCCACGCGA
141	2.38e-07	CGCAGTAGCC	GTGATTCTGATAT	AGTGACACGT
326	6.01e-07	CTACGGGTTT	GATATGCAAATAT	CTGTGATAAA
270	7.72e-07	GCGGTCGGAT	GTTAATTGAATAG	AGAGGGTGAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010162	100.0	1113	0	0	1	1113	1	1113	0.0	2056
aORI10010300	93.548	217	14	0	897	1113	1413	1629	0.0	324
aORI10010300	81.605	299	45	10	190	482	425	719	0.0	239
aORI10010216	86.905	168	18	3	948	1113	1470	1635	0.0	185
aORI10010216	78.065	310	45	18	190	487	446	744	8.40779e-45	174
aORI10010150	90.385	52	5	0	197	248	800	749	4.03e-13	69
aORI10010171	88.889	54	3	1	197	247	525	472	1.88e-11	64
aORI10010275	96.97	33	0	1	193	225	653	622	1.13e-08	55
aORI10010313	100.0	28	0	0	197	224	224	251	4.06e-08	53