DoriC

RefSeq

NC_017941.1

DoriC accession number

aORI10010216

OriC length

1635 nt

OriC AT content

0.4703

The location of oriC region

2947250..2948884 nt

Browse in NCBI

OriC map

OriC sequences

CCTGGGCCTCCCGCACCTCCCGACCACGTCGTGGAGGGCGTATGGAGGTATCACCCAACCGGACTCACTTAAGCACTACGTCAGACACCAGTCACGTTCCAGACAGAACGACAGAAACCGAAGAAGGCCCCCATTTCCACTCGAACGGACCATATTCACGGGTCTATCGTCTTTTACTGCCTGTCATCGCACTCGAGATGGTAATTCGTTGGCTTCCAATATTCTTGTTTTCGTGTGCGTGCACACGAAGCAGTCCTGACTGTCAACTCGAGTGAATTTATCTGAGGGGGAGCCGGTCTGTTTCGTCTCACCTTTCCTCCTTCTTTTTCTCCTGACGCTGTTCGTCGATAGCTCCCAGTTAGAAGTCGGTGGCACGTCTCCACGAGTGAGTCGTCTCCAGAGTAACTCGTGAGAGACCCTCCCACGGAGATGAAACAGTCGGGAGGGCACACCCCCACCCCTTCGTTTCAGGTGGAACGGCTCGAAGGGGTGGGTGGGGGGTGACCGCTAGACGGCAGCCGGGTGTTAATTCTATCTTCTACAACCGCTATAACAACCACATTTTCCCCAGTACGGATACGGTACAACGATATCAGTAATAAAACCACCGTGTTCTAAAGACCGCCGAGACCCCCCTCCCTCCCGTTTTGCGTCTCCACCCGAAACAAAGGGGTGTGGGGTATCCGAGAACCAGGGGCTTCCCGTCGAACTGGAGATCCACCACTTAATTGCACAGGAAACGAGGGGGTTAATCGACGTCCAAACTGATTCTACCCGCCGATTTCTGCAGATTACTGTTTTACCCGTTTCCACACGAAACAGAGGGGTGGCCCCAACCGATTTTTCGCATCGGCCCACCGGTATTATCACGTTTCGGGTCCAATTCGAGCTCAGTTCGACATGGGTCCGGGCCTAATTCGAGTCTAGATAAACGTTTCACCCCACTCGAATCTCACTCGATTCGACCAGAAGTCGATCTCAGCCGCCCGATACGACTGCAAGTTCTCGTTTTTCGTCGACGCGCACATCTTGAAATCGAATGCACGTACGGACCCTACGTTCGTGTCAGATACATACCCAAACCACCACCCCCGGCTTCAGGTCGAACGACTTCCGGGTGGTGTCTGCACCCACTTCCGGTTTGATACTGCTTTCTTTTGGTGGTCTCTTCGACCCACTGTACTATAGTAGCGTTTGCAACTGGTGACACATCCAATCACACACCGGTCGATCGAGTATCCAATGACTTACAAACGCTACTATAGACACGCTGTGGTCACTCCCACGGGCCTGACCTCCGACTCACTCTACTTCGACTAACTTCGACCTTTTTTCTGCCTCACCGACTCACCCCCAATATCTCTCGACCACTATATCCTACTCAACTCGACACACCCGAATTCGATGATTTTCGCTCGCTCGTGTCGAAATGGTCCTGTCCACTCCAGTTTCGGGTATTGAGCGTCGAGCGAGTCGGAGAAGTAAGCTTTTTGTACCAACTATTCGTTTGTTTCCTTTGCATCATCTGGAATCGCCTTCTTCGGTGCGAGGCGGAGAAGCCGAGTATTACCGGCTTCACGCCCTGTACTGGCCGACGTTGGCGACTATTCCACTTGAAACGAAGGGGTATACACG

ORB AT-rich region

The information of repeat sequences

Motif TTCCACHBGAAACRAAGGGGT

Start	P-value		Site
808	1.86e-12	TTTTACCCGT	TTCCACACGAAACAGAGGGGT	GGCCCCAACC
1608	3.28e-12	TTGGCGACTA	TTCCACTTGAAACGAAGGGGT	ATACACG
654	9.83e-12	CGTTTTGCGT	CTCCACCCGAAACAAAGGGGT	GTGGGGTATC
729	1.13e-11	CACCACTTAA	TTGCACAGGAAACGAGGGGGT	TAATCGACGT

Motif GAVCDNVTCGDAGRGGKVGBHKGKNKGTDHCVNCTADHCGK

Start	P-value		Site
475	6.99e-16	GTTTCAGGTG	GAACGGCTCGAAGGGGTGGGTGGGGGGTGACCGCTAGACGG	CAGCCGGGTG
1467	8.55e-16	ATTGAGCGTC	GAGCGAGTCGGAGAAGTAAGCTTTTTGTACCAACTATTCGT	TTGTTTCCTT
22	3.05e-15	CGCACCTCCC	GACCACGTCGTGGAGGGCGTATGGAGGTATCACCCAACCGG	ACTCACTTAA
274	1.52e-14	CAACTCGAGT	GAATTTATCTGAGGGGGAGCCGGTCTGTTTCGTCTCACCTT	TCCTCCTTCT

Motif ACTCGHWYSGACCHKAHBTCCGNSTCA

Start	P-value		Site
955	3.76e-11	CTCGAATCTC	ACTCGATTCGACCAGAAGTCGATCTCA	GCCGCCCGAT
139	5.08e-11	CCCCATTTCC	ACTCGAACGGACCATATTCACGGGTCT	ATCGTCTTTT
1279	8.16e-11	CGCTGTGGTC	ACTCCCACGGGCCTGACCTCCGACTCA	CTCTACTTCG
1042	1.49e-10	GAAATCGAAT	GCACGTACGGACCCTACGTTCGTGTCA	GATACATACC
1316	6.47e-10	CTCTACTTCG	ACTAACTTCGACCTTTTTTCTGCCTCA	CCGACTCACC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010216	100.0	1635	0	0	1	1635	1	1635	0.0	3020
aORI10010162	86.905	168	18	3	1470	1635	948	1113	0.0	185
aORI10010162	78.065	310	45	18	446	744	190	487	1.26117e-44	174
aORI10010300	82.063	223	32	7	1417	1635	1411	1629	0.0	183
aORI10010300	94.017	117	7	0	1	117	1	117	1.4013e-45	178
aORI10010150	92.157	51	2	2	452	501	800	751	1.66e-13	71
aORI10010171	92.157	51	1	2	452	499	525	475	5.96e-13	69
aORI10010275	100.0	29	0	0	452	480	650	622	1.67e-08	55
aORI10010313	100.0	28	0	0	452	479	224	251	6e-08	53