DoriC

RefSeq

NZ_CP021504

DoriC accession number

pORI00000963

OriC length

557 nt

OriC AT content

0.6194

The location of oriC region

2554..3110 nt

Browse in NCBI

OriC map

OriC sequences

GGCTCTTGGGTTGAGTAAAGTCAGTCAACTCCTTAAAGCCTCAAAAAGGGACTAACTGCTAAAGCAGTAAGTCCCTTTAATTCGATTTACCGTTGACAGACAGTTAGATAGCTCACTGTTAGCTAAAATCGCTTAGAACGCAAATAAGAGCCTTTAAAATTAACGTTCAAAAATAAAAAAGTTCGAAGGAGTTAGCGACTGAACTTATTTATTTTTGAATGTTCCAAACTGACGCAAGTCAGTTTTGTTTGAGCAAAGCGAAATCTGATACAGGTTTTGATGGGTTTAGCACAACACAACTTCATGTTGTGTGTAAGTGCGCATTACATGATAGTGCGCATTACATGATAGTGCGCATTACATGATAGTGCGCATTACATGATAGTGCGTATTACATGATAGTGCGTATTACATGATAGTGCGCATTACATGATAATGCGCACTTACACTCCAAATAAATTGGAGTAATGCTAAAACCTGTATCAGAAGTCAGCAAGCTGACAACAAAAAAGGGATATGCCAACGGATTTACCGTTGATCATATCCTGACATTCTCT

AT-rich region

The information of repeat sequences

Motif AGTGCGCATTACATG

Start	P-value		Site
418	7.85e-10	ATTACATGAT	AGTGCGCATTACATG	ATAATGCGCA
367	7.85e-10	ATTACATGAT	AGTGCGCATTACATG	ATAGTGCGTA
350	7.85e-10	ATTACATGAT	AGTGCGCATTACATG	ATAGTGCGCA
333	7.85e-10	ATTACATGAT	AGTGCGCATTACATG	ATAGTGCGCA
316	7.85e-10	GTTGTGTGTA	AGTGCGCATTACATG	ATAGTGCGCA

Motif AGTSCGTWTTAYWTG

Start	P-value		Site
401	8.24e-09	ATTACATGAT	AGTGCGTATTACATG	ATAGTGCGCA
384	8.24e-09	ATTACATGAT	AGTGCGTATTACATG	ATAGTGCGTA
237	2.34e-07	AACTGACGCA	AGTCAGTTTTGTTTG	AGCAAAGCGA
70	3.49e-07	TAAAGCAGTA	AGTCCCTTTAATTCG	ATTTACCGTT

Motif TTAMCGTTSA

Start	P-value		Site
529	9.79e-07	GCCAACGGAT	TTACCGTTGA	TCATATCCTG
87	9.79e-07	TTAATTCGAT	TTACCGTTGA	CAGACAGTTA
160	5.28e-06	GCCTTTAAAA	TTAACGTTCA	AAAATAAAAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000963	100.0	557	0	0	1	557	1	557	0.0	1029
pORI00000963	93.939	99	5	1	350	448	316	413	8.53e-37	148
pORI00000963	93.939	99	5	1	316	413	350	448	8.53e-37	148
pORI00000963	93.902	82	4	1	367	448	316	396	5.17e-29	122
pORI00000963	93.902	82	4	1	316	396	367	448	5.17e-29	122
pORI00000963	93.846	65	3	1	384	448	316	379	3.14e-21	97
pORI00000963	93.846	65	3	1	316	379	384	448	3.14e-21	97
pORI00000963	93.75	48	2	1	401	448	316	362	1.9e-13	71
pORI00000963	93.75	48	2	1	316	362	401	448	1.9e-13	71
pORI00000811	95.332	557	1	4	1	557	1	532	0.0	861
pORI00000811	93.846	65	3	1	384	448	316	379	3.14e-21	97
pORI00000811	94.231	52	0	2	316	367	350	398	4.08e-15	77
pORI00000811	93.75	48	2	1	401	448	316	362	1.9e-13	71
pORI00000751	94.42	448	24	1	1	448	656	210	0.0	688
pORI00000751	89.212	241	19	2	319	557	236	1	0.0	294
pORI00000368	90.824	425	28	7	25	438	609	185	0.0	558
pORI00000368	90.726	248	13	5	314	557	242	1	0.0	322
pORI00000460	90.115	435	26	10	25	448	658	230	0.0	549
pORI00000460	93.033	244	16	1	314	557	243	1	0.0	355
pORI00000042	90.115	435	26	10	25	448	658	230	0.0	549
pORI00000042	93.033	244	16	1	314	557	243	1	0.0	355
pORI00000649	93.272	327	18	2	116	438	1	327	0.0	479
pORI00000649	90.726	248	13	5	314	557	270	511	0.0	322
pORI00000444	95.181	249	5	4	316	557	249	1	0.0	387
pORI00000444	97.744	133	2	1	316	448	283	152	0.0	228
pORI00000444	95.726	117	4	1	332	448	284	169	0.0	187
pORI00000444	94.0	100	5	1	349	448	284	186	2.37e-37	150
pORI00000444	93.976	83	4	1	366	448	284	203	1.44e-29	124
pORI00000444	93.939	66	3	1	383	448	284	220	8.72e-22	99
pORI00000444	94.545	55	3	0	316	370	198	144	6.79e-18	86
pORI00000444	93.878	49	2	1	400	448	284	237	5.28e-14	73
pORI00000444	83.333	72	4	6	316	379	181	110	4.11e-10	60
pORI00000068	87.988	333	26	12	25	345	434	104	0.0	381
pORI00000068	95.161	62	2	1	418	478	135	74	3.14e-21	97
pORI00000265	78.8	250	41	10	82	325	407	164	1.42e-39	158
pORI00000197	85.811	148	14	5	1	141	181	34	2.37e-37	150
pORI00000183	98.795	83	1	0	19	101	139	57	8.53e-37	148
pORI00000174	95.238	84	3	1	19	101	140	57	8.59e-32	132
pORI00000391	89.474	76	7	1	403	477	134	59	1.13e-20	95
pORI00000250	79.699	133	13	5	438	557	132	1	2.44e-17	84