RefSeq NC_012220
DoriC accession number pORI00000460
OriC length 1155 nt
OriC AT content 0.6017
The location of oriC region 1217..259 nt
Browse in NCBI
OriC map
OriC sequences
AGAGAATGTCAGGATATGATCAACGGTAAATCCGTTGGCATATCCCTTTTTTGTTGTCAGCTTGCTGACTTCTGATACAGGTTTTAGCATTACTCCAATTTATTTGGAGTGTAAGTGCACATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCACATTATCATGTACATTATCATGTAGTGCGCATTATCATGTAGTGCGCACATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCACTTACACACAACATGAAGTTGTGTTGTGCTAAACCCATCAAAACCTGCATCAGATTTCGCGTTGCTCAAACGTAACTGACTTGCGTCAGTTTGGAACATTCAAAAATAAATAAGTTCAGTCGCTAGCTCCTTCGAACTTTTTTATTTTTGAACGTTAATTTTAAAGGCTCTTATTTGCGTTCTAAGCGATTTTAGCTAACAGTTAGCTATCTAACTGTCTGTCAACGGTAAATCGACTTAGAGGGGCTTATTGAGCCTTACAGGCGATATTAGCCCCTCTTGGAGGCTTTAAGGAGTTGATAGACTAGACAATACCAAAAGCCTGACGTCTTGGAAAACAAGCCCTTGTTTTCCCGAGCCCAGCGGCGGCAAGCGTTACGGTCCAGCTGGTTCAGCTGGTCAGTGTGGCTGAAAGCCACGGTTTAAAAAAAGCAGTTCAGCGGTTTTTGCTGATCTGCTTTTTGGGGTTTAAAAACGCCAATTTTTGGCGTTTTCTTCTTATCTTGATACTATTAGCAACAACTAGTTTTTTAAAATCAAGCTTGATTAGGCTTGATTAGGCTTGTATTCCTTGATTTTATAGGCTTTCGGTGTATTATTAGGGTTATAAATTGGTTGAAAGAAAGACAAAATAAAAACCCACGTGAAAATCTCCGATTGGCGTCCGAGCACGTGAGTTGTTTATCTTTTTCATTTGTAGCCTTTATTTTAGGTGTAAAAGCCTTTGGTGTCAAGGTTATAAGCTTATTGAAAAAGATAGTCAGCTCCTTCACGTGGTAAAGCGGAAGGAGCTTTTT
AGAGAATGTCAGGATATGATCAACGGTAAATCCGTTGGCATATCCCTTTTTTGTTGTCAGCTTGCTGACTTCTGATACAGGTTTTAGCATTACTCCAATTTATTTGGAGTGTAAGTGCACATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCACATTATCATGTACATTATCATGTAGTGCGCATTATCATGTAGTGCGCACATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCACTTACACACAACATGAAGTTGTGTTGTGCTAAACCCATCAAAACCTGCATCAGATTTCGCGTTGCTCAAACGTAACTGACTTGCGTCAGTTTGGAACATTCAAAAATAAATAAGTTCAGTCGCTAGCTCCTTCGAACTTTTTTATTTTTGAACGTTAATTTTAAAGGCTCTTATTTGCGTTCTAAGCGATTTTAGCTAACAGTTAGCTATCTAACTGTCTGTCAACGGTAAATCGACTTAGAGGGGCTTATTGAGCCTTACAGGCGATATTAGCCCCTCTTGGAGGCTTTAAGGAGTTGATAGACTAGACAATACCAAAAGCCTGACGTCTTGGAAAACAAGCCCTTGTTTTCCCGAGCCCAGCGGCGGCAAGCGTTACGGTCCAGCTGGTTCAGCTGGTCAGTGTGGCTGAAAGCCACGGTTTAAAAAAAGCAGTTCAGCGGTTTTTGCTGATCTGCTTTTTGGGGTTTAAAAACGCCAATTTTTGGCGTTTTCTTCTTATCTTGATACTATTAGCAACAACTAGTTTTTTAAAATCAAGCTTGATTAGGCTTGATTAGGCTTGTATTCCTTGATTTTATAGGCTTTCGGTGTATTATTAGGGTTATAAATTGGTTGAAAGAAAGACAAAATAAAAACCCACGTGAAAATCTCCGATTGGCGTCCGAGCACGTGAGTTGTTTATCTTTTTCATTTGTAGCCTTTATTTTAGGTGTAAAAGCCTTTGGTGTCAAGGTTATAAGCTTATTGAAAAAGATAGTCAGCTCCTTCACGTGGTAAAGCGGAAGGAGCTTTTT
AT-rich region
The information of repeat sequences

Motif TTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGC

StartP-valueSite
3083.24e-30AGTGCGCACATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCACTTACACAC
2073.24e-30GTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCACATTATCAT
1563.24e-30GTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGT
1059.02e-27CCAATTTATTTGGAGTGTAAGTGCACATTATCATGTAGTGCGCATTATCATGTAGTGCGCATTATCATGT

Motif AGCBGCTYWTTGDGGCTTAAAGVCG

StartP-valueSite
6004.56e-12ATCGACTTAGAGGGGCTTATTGAGCCTTACAGGCGATATTAGCCC
6301.58e-11AGGCGATATTAGCCCCTCTTGGAGGCTTTAAGGAGTTGATAGACT
7523.23e-11CAGCTGGTTCAGCTGGTCAGTGTGGCTGAAAGCCACGGTTTAAAA
8111.37e-10GTTTTTGCTGATCTGCTTTTTGGGGTTTAAAAACGCCAATTTTTG

Motif CATTATCATGT

StartP-valueSite
2875.79e-07ATGTAGTGCGCATTATCATGTAGTGCGCACA
2705.79e-07TTATCATGTACATTATCATGTAGTGCGCATT
2585.79e-07GTAGTGCGCACATTATCATGTACATTATCAT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000460 100.0 1155 0 0 1 1155 1 1155 0.0 2134
pORI00000460 92.788 208 1 5 162 362 110 310 0.0 289
pORI00000460 92.788 208 1 5 110 310 162 362 0.0 289
pORI00000460 90.104 192 1 7 179 362 110 291 0.0 233
pORI00000460 90.104 192 1 7 110 291 179 362 0.0 233
pORI00000460 92.073 164 1 5 196 351 110 269 0.0 220
pORI00000460 92.073 164 1 5 110 269 196 351 0.0 220
pORI00000460 92.357 157 1 5 213 362 110 262 0.0 213
pORI00000460 92.357 157 1 5 110 262 213 362 0.0 213
pORI00000460 91.367 139 1 5 230 362 110 243 0.0 180
pORI00000460 91.367 139 1 5 110 243 230 362 0.0 180
pORI00000460 92.92 113 0 3 255 362 117 226 2.99e-39 158
pORI00000460 92.92 113 0 3 117 226 255 362 2.99e-39 158
pORI00000460 95.876 97 1 2 266 362 116 209 3.87e-38 154
pORI00000460 95.876 97 1 2 116 209 266 362 3.87e-38 154
pORI00000460 94.186 86 1 3 278 362 110 192 2.35e-30 128
pORI00000460 94.186 86 1 3 110 192 278 362 2.35e-30 128
pORI00000460 98.333 60 0 1 303 362 117 175 3.95e-23 104
pORI00000460 98.333 60 0 1 117 175 303 362 3.95e-23 104
pORI00000460 94.0 50 1 2 314 362 110 158 3.1e-14 75
pORI00000460 94.0 50 1 2 110 158 314 362 3.1e-14 75
pORI00000042 97.332 1162 19 11 1 1155 1 1157 0.0 1964
pORI00000042 92.788 208 1 5 162 362 110 310 0.0 289
pORI00000042 92.788 208 1 5 110 310 162 362 0.0 289
pORI00000042 90.104 192 1 7 179 362 110 291 0.0 233
pORI00000042 90.104 192 1 7 110 291 179 362 0.0 233
pORI00000042 92.073 164 1 5 196 351 110 269 0.0 220
pORI00000042 92.073 164 1 5 110 269 196 351 0.0 220
pORI00000042 92.357 157 1 5 213 362 110 262 0.0 213
pORI00000042 92.357 157 1 5 110 262 213 362 0.0 213
pORI00000042 91.367 139 1 5 230 362 110 243 0.0 180
pORI00000042 91.367 139 1 5 110 243 230 362 0.0 180
pORI00000042 92.92 113 0 3 255 362 117 226 2.99e-39 158
pORI00000042 92.92 113 0 3 117 226 255 362 2.99e-39 158
pORI00000042 95.876 97 1 2 266 362 116 209 3.87e-38 154
pORI00000042 95.876 97 1 2 116 209 266 362 3.87e-38 154
pORI00000042 94.186 86 1 3 278 362 110 192 2.35e-30 128
pORI00000042 94.186 86 1 3 110 192 278 362 2.35e-30 128
pORI00000042 98.333 60 0 1 303 362 117 175 3.95e-23 104
pORI00000042 98.333 60 0 1 117 175 303 362 3.95e-23 104
pORI00000042 94.0 50 1 2 314 362 110 158 3.1e-14 75
pORI00000042 94.0 50 1 2 110 158 314 362 3.1e-14 75
pORI00000368 93.029 1162 19 15 1 1155 1 1107 0.0 1640
pORI00000368 97.059 170 1 3 196 362 110 278 0.0 283
pORI00000368 93.333 150 0 4 117 262 170 313 0.0 213
pORI00000368 95.489 133 1 3 116 243 181 313 0.0 207
pORI00000368 94.262 122 1 4 110 226 193 313 0.0 182
pORI00000368 96.875 96 0 2 117 209 218 313 2.99e-39 158
pORI00000368 90.351 114 0 3 255 362 117 225 1.08e-33 139
pORI00000368 85.315 143 1 9 230 362 110 242 6.52e-31 130
pORI00000368 94.186 86 1 3 110 192 229 313 2.35e-30 128
pORI00000368 88.889 99 1 4 266 362 116 206 6.57e-26 113
pORI00000368 98.361 61 0 1 303 362 117 177 1.1e-23 106
pORI00000368 92.208 77 1 3 278 351 110 184 3.95e-23 104
pORI00000368 98.333 60 0 1 117 175 254 313 3.95e-23 104
pORI00000368 94.0 50 1 2 314 362 110 158 3.1e-14 75
pORI00000368 94.0 50 1 2 110 158 265 313 3.1e-14 75
pORI00000751 92.576 660 19 10 1 658 1 632 0.0 920
pORI00000751 93.035 201 6 3 115 310 146 343 0.0 287
pORI00000751 91.489 188 7 5 110 291 159 343 0.0 250
pORI00000751 88.995 209 5 7 162 362 110 308 0.0 243
pORI00000751 94.375 160 6 2 110 269 176 332 0.0 243
pORI00000751 95.425 153 5 2 110 262 193 343 0.0 243
pORI00000751 94.815 135 5 2 110 243 210 343 0.0 209
pORI00000751 87.5 192 6 7 179 362 110 291 0.0 206
pORI00000751 94.915 118 4 2 110 226 227 343 0.0 183
pORI00000751 86.857 175 5 7 196 362 110 274 0.0 180
pORI00000751 95.05 101 3 2 110 209 244 343 2.99e-39 158
pORI00000751 89.916 119 4 5 247 362 110 223 6.47e-36 147
pORI00000751 86.26 131 11 5 230 357 110 236 1.4e-32 135
pORI00000751 95.238 84 2 2 110 192 261 343 1.81e-31 132
pORI00000751 94.03 67 2 2 110 175 278 343 5.11e-22 100
pORI00000649 91.25 560 0 3 1 560 511 1 0.0 717
pORI00000649 97.059 170 1 3 196 362 402 234 0.0 283
pORI00000649 93.333 150 0 4 117 262 342 199 0.0 213
pORI00000649 96.154 130 0 3 119 243 328 199 0.0 207
pORI00000649 94.262 122 1 4 110 226 319 199 0.0 182
pORI00000649 96.875 96 0 2 117 209 294 199 2.99e-39 158
pORI00000649 90.351 114 0 3 255 362 395 287 1.08e-33 139
pORI00000649 85.315 143 1 9 230 362 402 270 6.52e-31 130
pORI00000649 94.186 86 1 3 110 192 283 199 2.35e-30 128
pORI00000649 89.583 96 0 4 269 362 393 306 6.57e-26 113
pORI00000649 98.361 61 0 1 303 362 395 335 1.1e-23 106
pORI00000649 98.333 60 0 1 117 175 258 199 3.95e-23 104
pORI00000649 92.208 77 1 3 278 351 402 328 3.95e-23 104
pORI00000649 94.0 50 1 2 110 158 247 199 3.1e-14 75
pORI00000649 94.0 50 1 2 314 362 402 354 3.1e-14 75
pORI00000004 99.461 371 1 1 786 1155 1 371 0.0 673
pORI00000068 90.234 512 34 14 331 828 104 613 0.0 654
pORI00000963 89.796 441 28 10 230 664 448 19 0.0 549
pORI00000963 93.033 244 16 1 1 243 557 314 0.0 355
pORI00000811 90.931 419 23 9 247 664 423 19 0.0 549
pORI00000811 92.07 227 9 4 1 226 532 314 0.0 311
pORI00000197 84.57 512 55 17 535 1037 34 530 0.0 486
pORI00000444 89.855 276 19 6 1 269 1 274 0.0 346
pORI00000391 93.671 79 4 1 81 158 59 137 5.08e-27 117
pORI00000391 97.959 49 0 1 128 175 89 137 5.15e-17 84
pORI00000391 97.959 49 0 1 145 192 89 137 5.15e-17 84
pORI00000391 97.959 49 0 1 162 209 89 137 5.15e-17 84
pORI00000391 97.959 49 0 1 179 226 89 137 5.15e-17 84
pORI00000391 97.959 49 0 1 196 243 89 137 5.15e-17 84
pORI00000391 96.0 50 0 2 314 362 89 137 6.66e-16 81
pORI00000391 97.826 46 0 1 213 257 89 134 2.4e-15 79
pORI00000391 94.118 51 0 2 295 344 89 137 3.1e-14 75
pORI00000391 100.0 36 0 0 270 305 99 134 5.19e-12 68
pORI00000250 79.389 131 13 5 1 118 1 130 6.66e-16 81