DoriC

RefSeq

NC_012722

DoriC accession number

pORI00000250

OriC length

1566 nt

OriC AT content

0.6194

The location of oriC region

2370..1511 nt

Browse in NCBI

OriC map

OriC sequences

AGATAATACCAGGGTATTATCAACGACAAAACCGTTGGATATACCCTGATTTTTTGTTGTCGCCATTGGCGACTTCTGATACAGATTTTTTGGTTTTAGCACTACTCCAATTTATTTGGAGTGTAAGTGCGCCTTGAACTAATATTTTTGAATTTTGTCATTGTCGAAATATAAGACAATGCGCACTTACACGTCACTTTCATGACGTCGTGCGTTCTGACTGAAAAACGTCAGAAGGGCGCACTTATACTCCACGAAAATAAATGGGGTGTAAGTTGCTTAAAACCTGTATCAGAATTCGCTCCGCTCAAACTAAAACTGACGGGGGTCAGTTTGAAACCCAAAAAGCAGATAAGTTCAGTCGTAAACTCCTTCGAACTTTTCTCCTTTTTGGGTTGCTCTCAAAAGCCCAAAATTGCCTTCTAAGCCATTTTAGGAATTAACAAGCTATTTCGTCGTCTGTCAACGGTAAATCGACGTAGATAGCCTTATTGAGCCGTACAGGCGAAATTAGACTATCTAGGAGGCTTTAAGGAGTTGATAGACTTTGCAAATTGAAAGCTAAACGGCGGAAAGCAGCTTGCCTGTTTTCCCGAGCCCGACTGGCGGCGAAGTCGAAACGGTCAAGCTGGTTCAGCTTGTCAGGTTTGGGTGAAACCCAAGGTCTTACTTTTTTGGTCGTTAAAACTGGAAAATTTCACAAACTTTTTAAGCGGGTCTCTCTAACTAGCCCGCTACCCGTTTGAAAATCAAACCTTTTGCTTTTTTGTTCACATGAAAAAATGTGGTAATGTTCTAGTGTTTTAGAAAGAGATTTAAAGGGGATTAATAATGCCGAGGATTGACGAACGTAGTTGGAAAAAGATTTTTGAATTGGGTAATAACGGTAAATACGATGATGAAGCGTATGCTGAGATTCTTGCTACAGTATTGAATTTGCGTGTTGAAAAAGGCTTAACTCAAAGTGACGTTGCGAGAATATCTGGTTTATCTACGAGTATGATCTCTAAAATTGAAAGTCAATATACAGTACCGAGTGTAAAAAATTTCTTACGATATATTTTCGCCTTAGATTTGGATTGGGAACTCGTTCATAAACGTTAATTGAATTTTGGGTTTAAAAAAGAGGTTCAGTATGAACCTCTTTTTTGGGGTTTGAAAGTGACGTTTTTTGTCACTTTCCTCTTATCTTGATACTATTAGAAACAACGTCATTTTAAAAAACTGGGATAAACCCTTGACACAACTGGACTTAGGCGTATTATGAGTTTATAAAATGAATAAAGAAAAAACCCACGTGAGAATTCCTAGTTTGGCGACCCGGAACACGCGAGTTAATCTTGAATATTCGTATTTACTAGACATAGTTTAAAGCTTGAGTTAGTAAGCGTCAAGACCTTAGTTTTAGTAAATACATAAAAGATTAGCTCTTCTCACGTGGTTGGATGAGAGGAGCTTTTTAGTTTGGCTGATAGAAAAGTTTTAGTTGATCGATCGCAGTCGGGAAAAGTACGACCATGGCGAGAACATAAGTTAGAGAATTTACAGTATGGTGATTATTTACAA

AT-rich region

The information of repeat sequences

Motif GCGCACTTAYACKYCAC

Start	P-value		Site
181	3.25e-11	ATAAGACAAT	GCGCACTTACACGTCAC	TTTCATGACG
239	6.13e-11	CGTCAGAAGG	GCGCACTTATACTCCAC	GAAAATAAAT

Motif AAACCC

Start	P-value		Site
1290	1.35e-04	AATAAAGAAA	AAACCC	ACGTGAGAAT
1232	1.35e-04	AAACTGGGAT	AAACCC	TTGACACAAC
655	1.35e-04	GGTTTGGGTG	AAACCC	AAGGTCTTAC
337	1.35e-04	GGTCAGTTTG	AAACCC	AAAAAGCAGA

Motif GAGCCSKACWGGCG

Start	P-value		Site
595	7.20e-10	CTGTTTTCCC	GAGCCCGACTGGCG	GCGAAGTCGA
494	3.36e-09	TAGCCTTATT	GAGCCGTACAGGCG	AAATTAGACT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000250	100.0	1566	0	0	1	1566	1	1566	0.0	2892
pORI00000082	85.209	311	43	3	1152	1460	1029	1338	0.0	316
pORI00000067	84.858	317	36	12	1151	1462	540	849	0.0	309
pORI00000068	89.157	83	8	1	50	132	33	114	1.94e-22	102
pORI00000963	80.315	127	11	5	10	135	548	435	7.01e-17	84
pORI00000811	80.315	127	11	5	10	135	523	410	7.01e-17	84
pORI00000444	79.699	133	13	5	1	132	1	120	7.01e-17	84
pORI00000649	80.328	122	10	5	10	130	502	394	9.07e-16	81
pORI00000460	79.389	131	13	5	1	130	1	118	9.07e-16	81
pORI00000368	79.389	131	13	5	1	130	1	118	9.07e-16	81
pORI00000042	79.389	131	13	5	1	130	1	118	9.07e-16	81