DoriC

RefSeq

NC_017387.1

Accession number

NC_017387.1

DoriC accession number

ORI96010089

OriC length

615 nt

OriC AT content

0.738211

The location of oriC region

14794..15408 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAATCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAATAGGCTAAATATAAAGAGAAGATAAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACA-

dnaaGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAATCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAATAGGCTAAATATAAAGAGAAGATAAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACA-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TTGTGDATAAMT

Start	P-value		Site
371	6.38e-08	CTGATCCAAA	TTGTGGATAACT	AAAAAATATG
167	3.09e-07	TCAAAATCAA	TTGTGAATAACT	TTTTGCACAT
505	6.65e-07	AACAATTACT	TTGTGTATAACT	TTTAAATAAG
190	8.41e-07	TTTGCACATC	CTGTGGATAAAT	TATCACATAA
139	1.55e-06	AAGAAATCTC	TTGTGAATAAAT	TTAAATTCAA

Motif TCCACA

Start	P-value		Site
307	1.58e-04	ACAAGAAAAG	TCCACA	CTAATAAGAA
294	1.58e-04	AACTGTGAAA	TCCACA	AGAAAAGTCC
217	1.58e-04	CATAAACTTA	TCCACA	ATCCATAAAG
89	1.58e-04	ACCCAAGTTA	TCCACA	TCTGTCATGA
182	2.93e-04	AATAACTTTT	TGCACA	TCCTGTGGAT

Motif GGGSTS

Start	P-value		Site
358	2.82e-05	TTATTTAATA	GGGCTG	ATCCAAATTG
65	2.82e-05	CTGATGAGAA	GGGGTC	GCCATTCTAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010208	100.0	615	0	0	1	615	669	55	1136
ORI96010089	100.0	615	0	0	1	615	1	615	1136
ORI96010015	100.0	615	0	0	1	615	1	615	1136
ORI92710458	99.513	616	2	1	1	615	670	55	1120
ORI96010325	99.351	616	3	1	1	615	1	616	1114
ORI92510414	99.351	616	3	1	1	615	1	616	1114
ORI92310381	99.351	616	3	1	1	615	670	55	1114
ORI92710456	99.188	616	2	3	1	615	1	614	1107
ORI96010013	99.028	617	3	3	1	615	1	616	1103
ORI92310379	98.379	617	8	2	1	615	671	55	1083
ORI95010947	86.169	629	71	8	1	615	681	55	665
ORI93010694	85.737	631	70	12	1	615	681	55	649
ORI10010111	78.526	475	77	21	57	519	612	151	289