DoriC

RefSeq

NC_011586.1

Accession number

NC_011586.1

DoriC accession number

ORI92710456

OriC length

668 nt

OriC AT content

0.727545

The location of oriC region

23085..23752 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAACCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGCATAACTTTTAAATAAGAAAAATAGGCTAAATATAAGAGAAGATAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACATTGCACAATAAAATCGCGGACCTTTATAGAAAGATCATTTTTGGGAGTTTCGATrpmH

dnaaGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAACCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGCATAACTTTTAAATAAGAAAAATAGGCTAAATATAAGAGAAGATAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACATTGCACAATAAAATCGCGGACCTTTATAGAAAGATCATTTTTGGGAGTTTCGATrpmh

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TTGTGRATAAMT

Start	P-value		Site
371	7.05e-08	CTGATCCAAA	TTGTGGATAACT	AAAAAATATG
505	1.83e-07	AACAATTACT	TTGTGCATAACT	TTTAAATAAG
167	4.04e-07	TCAAAATCAA	TTGTGAATAACT	TTTTGCACAT
190	8.23e-07	TTTGCACATC	CTGTGGATAAAT	TATCACATAA
139	1.66e-06	AAGAAATCTC	TTGTGAATAAAT	TTAAATTCAA

Motif TCCACA

Start	P-value		Site
307	1.63e-04	ACAAGAAAAG	TCCACA	CTAATAAGAA
294	1.63e-04	AACTGTGAAA	TCCACA	AGAAAAGTCC
217	1.63e-04	CATAAACTTA	TCCACA	ATCCATAAAG
89	1.63e-04	ACCCAAGTTA	TCCACA	TCTGTCATGA
616	3.06e-04	GCGTAAACAT	TGCACA	ATAAAATCGC

Motif KSGSTSAYC

Start	P-value		Site
65	9.93e-07	CTGATGAGAA	GGGGTCGCC	ATTCTACCCA
358	2.08e-06	TTATTTAATA	GGGCTGATC	CAAATTGTGG
628	4.55e-06	CACAATAAAA	TCGCGGACC	TTTATAGAAA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI92710456	100.0	668	0	0	1	668	1	668	1234
ORI92710458	99.701	670	0	2	1	668	670	1	1225
ORI96010325	99.552	670	1	2	1	668	1	670	1219
ORI92310381	99.552	670	1	2	1	668	670	1	1219
ORI96010208	99.254	670	2	3	1	668	669	1	1206
ORI96010015	99.254	670	2	3	1	668	1	669	1206
ORI96010013	98.957	671	3	4	1	668	1	670	1197
ORI92310379	98.361	671	8	3	1	668	671	1	1175
ORI92510414	99.188	616	3	2	1	614	1	616	1109
ORI96010089	99.188	616	2	3	1	614	1	615	1107
ORI95010947	87.116	683	71	10	1	668	681	1	758
ORI93010694	86.715	685	70	14	1	668	681	1	741
ORI10010111	76.911	628	111	28	57	667	612	2	326