DoriC

RefSeq

NC_017171.1

Accession number

NC_017171.1

DoriC accession number

ORI96010015

OriC length

669 nt

OriC AT content

0.730942

The location of oriC region

6768..7436 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAATCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAATAGGCTAAATATAAAGAGAAGATAAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACATTGCACAATAAAATCGCGGACCTTTATAGAAAGATCATTTTTGGGAGTTTCGATrpmH

dnaaGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAATCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAATAGGCTAAATATAAAGAGAAGATAAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACATTGCACAATAAAATCGCGGACCTTTATAGAAAGATCATTTTTGGGAGTTTCGATrpmh

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TTGTGDATAAMT

Start	P-value		Site
371	7.17e-08	CTGATCCAAA	TTGTGGATAACT	AAAAAATATG
167	3.30e-07	TCAAAATCAA	TTGTGAATAACT	TTTTGCACAT
505	7.14e-07	AACAATTACT	TTGTGTATAACT	TTTAAATAAG
190	9.03e-07	TTTGCACATC	CTGTGGATAAAT	TATCACATAA
139	1.62e-06	AAGAAATCTC	TTGTGAATAAAT	TTAAATTCAA

Motif TCCACA

Start	P-value		Site
307	1.55e-04	ACAAGAAAAG	TCCACA	CTAATAAGAA
294	1.55e-04	AACTGTGAAA	TCCACA	AGAAAAGTCC
217	1.55e-04	CATAAACTTA	TCCACA	ATCCATAAAG
89	1.55e-04	ACCCAAGTTA	TCCACA	TCTGTCATGA
182	2.94e-04	AATAACTTTT	TGCACA	TCCTGTGGAT

Motif GGGSTS

Start	P-value		Site
358	3.61e-05	TTATTTAATA	GGGCTG	ATCCAAATTG
65	3.61e-05	CTGATGAGAA	GGGGTC	GCCATTCTAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010208	100.0	669	0	0	1	669	669	1	1236
ORI96010015	100.0	669	0	0	1	669	1	669	1236
ORI92710458	99.552	670	2	1	1	669	670	1	1219
ORI96010325	99.403	670	3	1	1	669	1	670	1214
ORI92310381	99.403	670	3	1	1	669	670	1	1214
ORI92710456	99.254	670	2	3	1	669	1	668	1206
ORI96010013	99.106	671	3	3	1	669	1	670	1203
ORI92310379	98.51	671	8	2	1	669	671	1	1182
ORI96010089	100.0	615	0	0	1	615	1	615	1136
ORI92510414	99.351	616	3	1	1	615	1	616	1114
ORI95010947	87.116	683	72	8	1	669	681	1	760
ORI93010694	86.861	685	70	12	1	669	681	1	749
ORI10010111	76.984	630	108	30	57	668	612	2	326