DoriC

RefSeq

NC_016603.1

Accession number

NC_016603.1

DoriC accession number

ORI95010947

OriC length

681 nt

OriC AT content

0.722467

The location of oriC region

2626910..2627590 nt

Browse in NCBI

OriC map

OriC sequences

rpmHATTGAAACTCCCAAAAATGATCTTTCTATAAAGGTCCGCGATTTTATTGTGCAATGTTTACGCTGTCAATGAAAAACCAAGAAAGTTTTGTATTTAACCCAAATTTTTAATCTCTTCTCTTCTTTTTATCACGATCATAATTCAGTGCAATATATAGCTTTAAAAGTTATACACAAAGTAATTGTCTATTTTTATTAGAACTTTTAATATATACACACCTTATATACATATTTATCAACAAAACAAGATACCATCTTGGTTTGGATTTGCTGTATTTGAATTTAAATTCATATTTTGCAGTTATCCACAAAAGATCACCACCCTATTAAATAAATTCAAATTTAGAAATTTAAATTTATTCTTATTAGGGATAACTTTTTCTGTGGATTTCGCACTTTTAAATTTAAAAAACATACATTTGAGTTGTTGATAACTCTGTTTTTACTATATTTATGGATTGTGGATAAGTTTATGTGTTAATTTATCCACAGGTTGTGCAAAAAGTTATACACAAGCCATTTTGAATTTAAATTTATTCACAAGAGATTTCTTTTTAGACAAAATCAACTGAAATCGTCATGACAGATGTGGATAACTTGGTTAGAATGGCGACCCCTTCTCATCAGGAAGGATTAATCTTTAGATTATTTGAATTTAAAAACGCAGAAATAGGGGATACACdnaA

rpmhATTGAAACTCCCAAAAATGATCTTTCTATAAAGGTCCGCGATTTTATTGTGCAATGTTTACGCTGTCAATGAAAAACCAAGAAAGTTTTGTATTTAACCCAAATTTTTAATCTCTTCTCTTCTTTTTATCACGATCATAATTCAGTGCAATATATAGCTTTAAAAGTTATACACAAAGTAATTGTCTATTTTTATTAGAACTTTTAATATATACACACCTTATATACATATTTATCAACAAAACAAGATACCATCTTGGTTTGGATTTGCTGTATTTGAATTTAAATTCATATTTTGCAGTTATCCACAAAAGATCACCACCCTATTAAATAAATTCAAATTTAGAAATTTAAATTTATTCTTATTAGGGATAACTTTTTCTGTGGATTTCGCACTTTTAAATTTAAAAAACATACATTTGAGTTGTTGATAACTCTGTTTTTACTATATTTATGGATTGTGGATAAGTTTATGTGTTAATTTATCCACAGGTTGTGCAAAAAGTTATACACAAGCCATTTTGAATTTAAATTTATTCACAAGAGATTTCTTTTTAGACAAAATCAACTGAAATCGTCATGACAGATGTGGATAACTTGGTTAGAATGGCGACCCCTTCTCATCAGGAAGGATTAATCTTTAGATTATTTGAATTTAAAAACGCAGAAATAGGGGATACACdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AAKTTATHCACAAR

Start	P-value		Site
502	2.07e-08	GTTGTGCAAA	AAGTTATACACAAG	CCATTTTGAA
479	8.87e-08	TTTATGTGTT	AATTTATCCACAGG	TTGTGCAAAA
298	8.87e-08	TCATATTTTG	CAGTTATCCACAAA	AGATCACCAC
164	1.36e-07	ATAGCTTTAA	AAGTTATACACAAA	GTAATTGTCT
530	3.33e-07	TTTGAATTTA	AATTTATTCACAAG	AGATTTCTTT

Motif TGTGGATAACTY

Start	P-value		Site
587	1.78e-07	TCATGACAGA	TGTGGATAACTT	GGTTAGAATG
459	5.90e-07	ATTTATGGAT	TGTGGATAAGTT	TATGTGTTAA
425	1.14e-06	ACATTTGAGT	TGTTGATAACTC	TGTTTTTACT
366	2.50e-06	TTATTCTTAT	TAGGGATAACTT	TTTCTGTGGA
382	2.96e-06	TAACTTTTTC	TGTGGATTTCGC	ACTTTTAAAT

Motif SRCSACCC

Start	P-value		Site
608	3.69e-07	TGGTTAGAAT	GGCGACCC	CTTCTCATCA
316	5.83e-06	CACAAAAGAT	CACCACCC	TATTAAATAA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI95010947	100.0	681	0	0	1	681	1	681	1258
ORI93010694	93.558	683	40	4	1	681	1	681	1014
ORI96010013	87.353	680	71	9	4	681	667	1	765
ORI96010208	87.116	683	72	8	1	681	1	669	760
ORI96010015	87.206	680	71	8	4	681	666	1	760
ORI92710458	87.116	683	73	8	1	681	1	670	760
ORI92710456	87.206	680	70	10	4	681	665	1	758
ORI96010325	87.059	680	73	8	4	681	667	1	754
ORI92310381	86.969	683	74	8	1	681	1	670	754
ORI92310379	86.404	684	77	9	1	681	1	671	734
ORI92510414	86.328	629	71	8	55	681	616	1	671
ORI96010089	86.169	629	71	8	55	681	615	1	665
ORI10010111	80.672	357	57	10	274	624	262	612	267