DoriC

RefSeq

NC_015848.1

Accession number

NC_015848.1

DoriC accession number

ORI94040332

OriC length

603 nt

OriC AT content

0.404643

The location of oriC region

4481457..4482059 nt

Browse in NCBI

OriC map

OriC sequences

rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACGGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCTGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA

rpmhGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACGGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCTGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GTTWTC

Start	P-value		Site
435	1.17e-04	TGAACCGGGT	GTTTTC	AACACGAGGA
88	1.17e-04	GTCGGAGGTG	GTTTTC	GCTGCTGGCC
481	2.48e-04	GTTGCGGCTG	GTTATC	GACGGTACTG
346	2.48e-04	GGGCGGTGTA	GTTATC	ACGCCGTTTC

Motif ACAACKGTT

Start	P-value		Site
540	4.65e-06	CCTGCCCACA	ACAACGGTT	GTAGCTCGAC
299	4.65e-06	ACAACGCAAA	ACAACGGTT	GGCAGCCGTA
321	5.94e-06	AGCCGTACGG	AAAACTGTT	AGCTTCGGGC
154	3.13e-05	CGACTTTCGG	GCGACTGTT	TGAGGGTACT

Motif CCKGRACHAA

Start	P-value		Site
113	1.54e-06	CGGCGCGGTC	CCTGGACTAA	TCCAGGTCGC
572	2.52e-06	GAACCAAGAC	CCGGAACTAA	CGAGAACCAG
559	1.45e-05	GTAGCTCGAC	CCGGAACCAA	GACCCGGAAC
185	1.92e-05	CGCGCCTTCG	CCTGGTCAAA	CCTCGCCCAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI94040332	100.0	603	0	0	1	603	1	603	0.0	1114
ORI96040591	99.502	603	3	0	1	603	1	603	0.0	1098
ORI96040589	99.502	603	3	0	1	603	1	603	0.0	1098
ORI96040578	99.502	603	3	0	1	603	1	603	0.0	1098
ORI96010624	99.502	603	3	0	1	603	861	1463	0.0	1098
ORI96040558	99.502	603	3	0	1	603	1	603	0.0	1098
ORI95010994	99.502	603	3	0	1	603	1	603	0.0	1098
ORI95040361	99.502	603	3	0	1	603	1	603	0.0	1098
ORI94040330	99.502	603	3	0	1	603	1	603	0.0	1098
ORI93040202	99.502	603	3	0	1	603	1	603	0.0	1098
ORI92710501	99.502	603	3	0	1	603	1	603	0.0	1098
ORI92040110	99.502	603	3	0	1	603	1	603	0.0	1098
ORI90040108	99.502	603	3	0	1	603	1	603	0.0	1098
ORI96040579	99.337	603	4	0	1	603	1	603	0.0	1092
ORI95011031	98.512	605	7	1	1	603	1	605	0.0	1066
ORI96010627	87.903	124	13	2	80	201	286	409	1.54e-35	145
ORI96010623	87.903	124	13	2	80	201	69	192	1.54e-35	145
ORI95011027	87.903	124	13	2	80	201	265	388	1.54e-35	145
ORI95011026	88.0	125	11	4	80	201	304	427	1.54e-35	145
ORI96010622	88.0	125	11	4	80	201	304	427	1.54e-35	145
ORI60040083	85.714	126	13	5	80	201	69	193	1.55e-30	128