DoriC

RefSeq

NC_016946.1

Accession number

NC_016946.1

DoriC accession number

ORI96010622

OriC length

870 nt

OriC AT content

0.368966

The location of oriC region

5401565..32 nt

Browse in NCBI

OriC map

OriC sequences

-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AACGACCCGA

Start	P-value		Site
534	9.49e-07	ACTCACCCTA	AACGACCCGA	TTGGAATGCA
503	9.49e-07	TGACTACGAT	AACGACCCGA	ACCAAGGCCC
75	4.47e-06	AGCACCGCCG	AAAGACCTGA	CCCGCGATCA
628	5.53e-06	AGCGCTCGAC	AACGAAGCGA	GGATGGTGGA

Motif AMAVYCGTTT

Start	P-value		Site
597	8.63e-07	AGCTTCTGCC	AAAGTCGTTT	TAGACTGAAG
768	6.71e-06	AACTATGTGG	ACAGCCGTTT	CGTCGCCAAG
664	6.71e-06	AGCTGCCTAG	ACAACCTTTT	TGGGTTTTCT
578	1.23e-05	AGCCGCACGG	AAAACTGTTA	GCTTCTGCCA
28	2.56e-05	CCGTCGCGTC	AAACTCAATT	GACCGCGTCA

Motif AYCMGGSMGAT

Start	P-value		Site
91	1.12e-07	CTGACCCGCG	ATCAGGCAGAT	AGCGCGCGGC
821	9.88e-07	ACGTTCGAGA	ACCAGGGAGAT	GCGTCGTTGA
258	2.40e-06	GTTGTTTGCC	ATCCGGCCGAT	CAGACGGTTC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI95011026	100.0	870	0	0	1	870	1	870	0.0	1607
ORI96010622	100.0	870	0	0	1	870	1	870	0.0	1607
ORI96010627	99.648	852	3	0	19	870	1	852	0.0	1557
ORI95011027	99.519	831	4	0	40	870	1	831	0.0	1513
ORI96010623	98.268	635	11	0	236	870	1	635	0.0	1112
ORI60040083	90.596	638	48	11	236	866	1	633	0.0	835
ORI94040332	88.0	125	11	4	304	427	80	201	2.25e-35	145
ORI92310403	82.734	139	18	3	300	435	56	191	1.36e-27	119
ORI96040579	73.977	342	54	18	558	870	301	636	1.06e-23	106