RefSeq NC_016947.1
Accession number NC_016947.1
DoriC accession number ORI95011026
OriC length 870 nt
OriC AT content 0.368966
The location of oriC region 5408859..32 nt
Browse in NCBI
OriC map
OriC sequences
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaa
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-GCGGATCCCGTGCTTCACCGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTGCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCGGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA

5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AACGACCCGA

StartP-valueSite
5349.49e-07ACTCACCCTAAACGACCCGATTGGAATGCA
5039.49e-07TGACTACGATAACGACCCGAACCAAGGCCC
754.47e-06AGCACCGCCGAAAGACCTGACCCGCGATCA
6285.53e-06AGCGCTCGACAACGAAGCGAGGATGGTGGA

Motif AMAVYCGTTT

StartP-valueSite
5978.63e-07AGCTTCTGCCAAAGTCGTTTTAGACTGAAG
7686.71e-06AACTATGTGGACAGCCGTTTCGTCGCCAAG
6646.71e-06AGCTGCCTAGACAACCTTTTTGGGTTTTCT
5781.23e-05AGCCGCACGGAAAACTGTTAGCTTCTGCCA
282.56e-05CCGTCGCGTCAAACTCAATTGACCGCGTCA

Motif AYCMGGSMGAT

StartP-valueSite
911.12e-07CTGACCCGCGATCAGGCAGATAGCGCGCGGC
8219.88e-07ACGTTCGAGAACCAGGGAGATGCGTCGTTGA
2582.40e-06GTTGTTTGCCATCCGGCCGATCAGACGGTTC

Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI95011026 100.0 870 0 0 1 870 1 870 0.0 1607
ORI96010622 100.0 870 0 0 1 870 1 870 0.0 1607
ORI96010627 99.648 852 3 0 19 870 1 852 0.0 1557
ORI95011027 99.519 831 4 0 40 870 1 831 0.0 1513
ORI96010623 98.268 635 11 0 236 870 1 635 0.0 1112
ORI60040083 90.596 638 48 11 236 866 1 633 0.0 835
ORI94040332 88.0 125 11 4 304 427 80 201 2.25e-35 145
ORI92310403 82.734 139 18 3 300 435 56 191 1.36e-27 119
ORI96040579 73.977 342 54 18 558 870 301 636 1.06e-23 106