DoriC

RefSeq

NC_008595.1

Accession number

NC_008595.1

DoriC accession number

ORI60040083

OriC length

637 nt

OriC AT content

0.397174

The location of oriC region

5474887..32 nt

Browse in NCBI

OriC map

OriC sequences

rpmHGACGTTCTCCTCGTTGTTTGCCGTCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTTCGACCGGAGGGTGGTCTTGCTGCTCCTGGCCGGCGCGGTCCCCAAGTGGTGCTGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCGCCTGGTCAAACCTGGCCTGCCGCAACGCAGCCGCGCCCGGCCGGTACCGAGATTTTGCATTCCGCTCCCGCCGGCCACTCGGGTCAACTAACCTACCGAGCCGAAGCAAGCCCCAGTCACCCTAAACGACCGGATTGGAGTACAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAGTCGTTTAGACTACGAACAGCGCTCGACAACGAAGCGAGGATGGTAGATCAACTAGCTGCCTAGACAACCTTTTTCGGGTTTTCTTCCAGCGCGGAGATCGCGGGCCGTCGCCGGTAGGTTGTGGCTCGCATACGATCATCCTGTCCACACCTGTGTATAACTATGTGGACAGTTGTTTTGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGGCCGATGACCCCGGTTCAAGCTTCACCACGdnaA

rpmhGACGTTCTCCTCGTTGTTTGCCGTCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTTCGACCGGAGGGTGGTCTTGCTGCTCCTGGCCGGCGCGGTCCCCAAGTGGTGCTGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCGCCTGGTCAAACCTGGCCTGCCGCAACGCAGCCGCGCCCGGCCGGTACCGAGATTTTGCATTCCGCTCCCGCCGGCCACTCGGGTCAACTAACCTACCGAGCCGAAGCAAGCCCCAGTCACCCTAAACGACCGGATTGGAGTACAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAGTCGTTTAGACTACGAACAGCGCTCGACAACGAAGCGAGGATGGTAGATCAACTAGCTGCCTAGACAACCTTTTTCGGGTTTTCTTCCAGCGCGGAGATCGCGGGCCGTCGCCGGTAGGTTGTGGCTCGCATACGATCATCCTGTCCACACCTGTGTATAACTATGTGGACAGTTGTTTTGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGGCCGATGACCCCGGTTCAAGCTTCACCACGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TMGACAACSA

Start	P-value		Site
389	1.76e-06	CGAACAGCGC	TCGACAACGA	AGCGAGGATG
427	4.01e-06	ACTAGCTGCC	TAGACAACCT	TTTTCGGGTT
372	4.01e-06	CCAAGTCGTT	TAGACTACGA	ACAGCGCTCG
582	5.11e-06	CCCGGGACGT	TCGAGAACCA	GGGAGATGCG

Motif TCAACTA

Start	P-value		Site
414	2.52e-05	GGATGGTAGA	TCAACTA	GCTGCCTAGA
260	2.52e-05	GCCACTCGGG	TCAACTA	ACCTACCGAG

Motif RACDGTT

Start	P-value		Site
347	3.06e-05	CCGCACGGAA	AACTGTT	AGCTTCTGCC
148	8.17e-05	ACTTTCGGGC	GACTGTT	TGAGGGTACT
325	1.23e-04	AGTACAGCGG	AACGGTT	GGCAGCCGCA
36	1.92e-04	CGGCCGCTCA	GACGGTT	CGCTTCGGGC
534	2.59e-04	TAACTATGTG	GACAGTT	GTTTTGTCGC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI60040083	100.0	637	0	0	1	637	1	637	0.0	1177
ORI96010627	90.596	638	48	11	1	633	218	848	0.0	835
ORI95011026	90.596	638	48	11	1	633	236	866	0.0	835
ORI96010622	90.596	638	48	11	1	633	236	866	0.0	835
ORI95011027	90.282	638	50	11	1	633	197	827	0.0	824
ORI96010623	90.141	639	49	12	1	633	1	631	0.0	819
ORI92310403	84.507	142	13	9	64	201	55	191	1.27e-31	132
ORI94040332	85.714	126	13	5	69	193	80	201	1.64e-30	128