RefSeq NC_018078.1
Accession number NC_018078.1
DoriC accession number ORI96040589
OriC length 603 nt
OriC AT content 0.402985
The location of oriC region 4398619..101 nt
Browse in NCBI
OriC map
OriC sequences
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmhGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaa
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TRGTTWTC

StartP-valueSite
4796.63e-06AGGTTGCGGCTGGTTATCGACGGTACTG
3441.18e-05TCGGGCGGTGTAGTTATCACGCCGTTTC
861.76e-05CAGTCGGAGGTGGTTTTCGCTGCTGGCC

Motif RACDGTT

StartP-valueSite
3232.75e-05CCGTACGGAAAACTGTTAGCTTCGGGC
5426.80e-05TGCCCACAACAACGGTTGTAGCTCGAC
3016.80e-05AACGCAAAACAACGGTTGGCAGCCGTA
1561.03e-04ACTTTCGGGCGACTGTTCGAGGGTACT
5212.27e-04TAGCCATGTGGACAGTTCACCTGCCCA

Motif CCKGRACHAA

StartP-valueSite
1131.59e-06CGGCGCGGTCCCTGGACTAATCCAGGTCGC
5722.62e-06GAACCAAGACCCGGAACTAACGAGAACCAG
5591.64e-05GTAGCTCGACCCGGAACCAAGACCCGGAAC
1852.02e-05CGCGCCTTCGCCTGGTCAAACCTCGCCCAC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96040591 100.0 603 0 0 1 603 1 603 0.0 1114
ORI96040589 100.0 603 0 0 1 603 1 603 0.0 1114
ORI96040578 100.0 603 0 0 1 603 1 603 0.0 1114
ORI96010624 100.0 603 0 0 1 603 861 1463 0.0 1114
ORI96040558 100.0 603 0 0 1 603 1 603 0.0 1114
ORI95010994 100.0 603 0 0 1 603 1 603 0.0 1114
ORI95040361 100.0 603 0 0 1 603 1 603 0.0 1114
ORI94040330 100.0 603 0 0 1 603 1 603 0.0 1114
ORI93040202 100.0 603 0 0 1 603 1 603 0.0 1114
ORI92710501 100.0 603 0 0 1 603 1 603 0.0 1114
ORI92040110 100.0 603 0 0 1 603 1 603 0.0 1114
ORI90040108 100.0 603 0 0 1 603 1 603 0.0 1114
ORI96040579 99.834 603 1 0 1 603 1 603 0.0 1109
ORI94040332 99.502 603 3 0 1 603 1 603 0.0 1098
ORI95011031 99.008 605 4 1 1 603 1 605 0.0 1083