RefSeq | NC_018078.1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Accession number | NC_018078.1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Lineage | bacteria, actinobacteria, actinobacteridae, actinomycetales, corynebacterineae, mycobacteriaceae, mycobacterium, mycobacterium tuberculosis complex. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
DoriC accession number | ORI96040589 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC length | 603 nt | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC AT content | 0.402985 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
The location of oriC region | 4398619..101 nt | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Browse in NCBI | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC map | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC sequences |
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmhGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaa
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
rpmHGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA
5'-DnaA box-3'
3'-DnaA box-5'
Spacer
DnaA-trio
ATP-DnaA box
AT-rich region GATC   CtrA binding motif Fis binding site IHF binding site |
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The information of repeat sequences |
Motif TRGTTWTC
Motif RACDGTT
Motif CCKGRACHAA
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Distribution of genes on leading or lagging strand | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Distribution of nucleotide on leading or lagging strand | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
The result of BLAST |
Download
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