DoriC

RefSeq

NC_017522.1

Accession number

NC_017522.1

DoriC accession number

ORI96010624

OriC length

1463 nt

OriC AT content

0.385509

The location of oriC region

4404519..4405981 nt

Browse in NCBI

OriC map

OriC sequences

-GCTCCCCTCGCTTTGACGCAGGGTTCCAGTCGTCGTTCGCGCCGTCGACGTCTGTCTGGCAGCTCCGGCCTGTCGTTAAGCCTTCCGGTATCGGATCCCATCCTCCCCGATGCCATGGTCCGCACTTTGCGAGCCTGATCATGGTCAACCAGCTTCCCCGCAACAGGCCATACTCGGTGAGCGCATCGACGGCGTACTGACTACAGGTAGGGACAAAGCGGCACGACGCCGGTCGTAGCGGCGAAAGCATGTGCCGATAGACCTGGATAACGAAAATCAACCCCCGCGCTGATGCTCTACCGGTAACCCGGACCACGCGCCCACAGCTTTGCCTAGACAGACTCACCGATCACTACCTGCCAGTTCGACAGCCCTCCGCAAGCCGCATCGCAGTTGCTGCTCCAACCGAGCCGAGGAGACATGCCGGCTGCTCGGCAGCGCGCGGATCACCACATGATCGGACGGGTGGAGTTCTTTGACGATCGACCCAGCCACGTGCCGCAGCCGACGTGCCACGCGGTGGCGTTCCACGGCCGACCCCACCGACTTGGCGATAATCAGTCCGACGCGCGGCCCACCGCCACTCCCACGCCACCAATAAACGACCATGTCAGACCGCACGGTACGCATCCCGTGCTTCACCGTTGTTTCAAAATCCGCTGACCGCCTCATGCGGTTGCGTGCACGAAGCACCGCAAATAAGCCCGGTGTTGCAATCAAGCACTGAGCGTGCGCCGACCCTTGCGTCGCCGGCTGGACACAATTGACCTCCCGGCGCGGGTACGCATCCGTAAGCGGAAACCGTGAACACGAGCTCGCCGCCGGTTGTTCGGCTGGAAGGTCCTTTTGCCCTTGGTCACGGGCGTCTCCTCGCTATGTCTGGCAACATCACCATCCGGCCACTCACTGCCTTCCAACTCGATTGGCCCGCGGGACAGTCGGAGGTGGTTTTCGCTGCTGGCCGGCGCGGTCCCTGGACTAATCCAGGTCGCAGCCGCATCGCCGACTTTCGGGCGACTGTTCGAGGGTACTTACGCGCCTTCGCCTGGTCAAACCTCGCCCACCCGGCAACCGCTTCAGGGCATCCTGCCCGCTAAGCTGCTCACCATCCGTACACCCGAGACCGCCACACTCACAAAGAACCCACCACAACGCAAAACAACGGTTGGCAGCCGTACGGAAAACTGTTAGCTTCGGGCGGTGTAGTTATCACGCCGTTTCAGCGTGGAAACGGCACTCGACAATCAAGCGAGGATGGCGGATCGACTAGCGGCCCGGACAACTTGAACCGGGTGTTTTCAACACGAGGATCGCGAGCCGTTGCCGGTAGGTTGCGGCTGGTTATCGACGGTACTGTCCACATTTGTGGATAGCCATGTGGACAGTTCACCTGCCCACAACAACGGTTGTAGCTCGACCCGGAACCAAGACCCGGAACTAACGAGAACCAGGGAGATACGTCGdnaA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GSWTVGCVGVCGTACKGDCNACWGTT

Start	P-value		Site
1164	1.20e-12	GCAAAACAAC	GGTTGGCAGCCGTACGGAAAACTGTT	AGCTTCGGGC
183	1.27e-11	CTCGGTGAGC	GCATCGACGGCGTACTGACTACAGGT	AGGGACAAAG
997	4.00e-11	GGTCGCAGCC	GCATCGCCGACTTTCGGGCGACTGTT	CGAGGGTACT
1340	9.72e-11	GGTTGCGGCT	GGTTATCGACGGTACTGTCCACATTT	GTGGATAGCC

Motif GGTGTWKYHAWCAMG

Start	P-value		Site
1200	2.94e-09	AGCTTCGGGC	GGTGTAGTTATCACG	CCGTTTCAGC
707	9.81e-09	AAATAAGCCC	GGTGTTGCAATCAAG	CACTGAGCGT
1292	1.20e-08	ACTTGAACCG	GGTGTTTTCAACACG	AGGATCGCGA

Motif GYTGHWGCTCBAMCSGDRMCSMRGA

Start	P-value		Site
1406	5.65e-13	CACAACAACG	GTTGTAGCTCGACCCGGAACCAAGA	CCCGGAACTA
288	3.13e-12	CAACCCCCGC	GCTGATGCTCTACCGGTAACCCGGA	CCACGCGCCC
393	8.57e-12	CCGCATCGCA	GTTGCTGCTCCAACCGAGCCGAGGA	GACATGCCGG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010624	100.0	1463	0	0	1	1463	1	1463	2702
ORI96040591	100.0	603	0	0	861	1463	1	603	1114
ORI96040589	100.0	603	0	0	861	1463	1	603	1114
ORI96040578	100.0	603	0	0	861	1463	1	603	1114
ORI96040558	100.0	603	0	0	861	1463	1	603	1114
ORI95010994	100.0	603	0	0	861	1463	1	603	1114
ORI95040361	100.0	603	0	0	861	1463	1	603	1114
ORI94040330	100.0	603	0	0	861	1463	1	603	1114
ORI93040202	100.0	603	0	0	861	1463	1	603	1114
ORI92710501	100.0	603	0	0	861	1463	1	603	1114
ORI92040110	100.0	603	0	0	861	1463	1	603	1114
ORI90040108	100.0	603	0	0	861	1463	1	603	1114
ORI96040579	99.834	603	1	0	861	1463	1	603	1109
ORI94040332	99.502	603	3	0	861	1463	1	603	1098
ORI95011031	99.008	605	4	1	861	1463	1	605	1083