RefSeq NC_016948.1
Accession number NC_016948.1
DoriC accession number ORI95011027
OriC length 831 nt
OriC AT content 0.367028
The location of oriC region 5500292..32 nt
Browse in NCBI
OriC map
OriC sequences
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaa
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGACGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGATCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTGTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AACGACCCGA

StartP-valueSite
4959.55e-07ACTCACCCTAAACGACCCGATTGGAATGCA
4649.55e-07TGACTACGATAACGACCCGAACCAAGGCCC
364.50e-06AGCACCGCCGAAAGACCTGACCCGCGATCA
5895.56e-06AGCGCTCGACAACGAAGCGAGGATGGTGGA

Motif AMARCYKTT

StartP-valueSite
5391.77e-06AGCCGCACGGAAAACTGTTAGCTTCTGCC
4181.12e-05GGACCCGGCGAAAGATTTTCCGTTCCGGT
5581.75e-05AGCTTCTGCCAAAGTCGTTTTAGACTGAA
6252.06e-05AGCTGCCTAGACAACCTTTGTGGGTTTTC
7293.19e-05AACTATGTGGACAGCCGTTTCGTCGCCAA

Motif AYCAGGSAGAT

StartP-valueSite
522.23e-07CTGACCCGCGATCAGGCAGATAGCGCGCGGC
7825.90e-07ACGTTCGAGAACCAGGGAGATGCGTCGTTGA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI95011027 100.0 831 0 0 1 831 1 831 0.0 1535
ORI96010627 99.639 831 3 0 1 831 22 852 0.0 1519
ORI95011026 99.519 831 4 0 1 831 40 870 0.0 1513
ORI96010622 99.519 831 4 0 1 831 40 870 0.0 1513
ORI96010623 98.425 635 10 0 197 831 1 635 0.0 1118
ORI60040083 90.282 638 50 11 197 827 1 633 0.0 824
ORI94040332 87.903 124 13 2 265 388 80 201 2.14e-35 145
ORI92310403 83.453 139 17 3 261 396 56 191 2.79e-29 124
ORI96040579 73.977 342 54 18 519 831 301 636 1.01e-23 106