RefSeq NC_018612.1
Accession number NC_018612.1
DoriC accession number ORI96010627
OriC length 852 nt
OriC AT content 0.369718
The location of oriC region 5588156..5589007 nt
Browse in NCBI
OriC map
OriC sequences
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaa
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
-CGTCGCGTCAAACTCAATTGACCGCGTCATGCGGTTGCGTGCGGGAAGCACCGCCGAAAGACCTGACCCGCGATCAGGCAGATAGCGCGCGGCGGCCCTTGCGGCGCCGACCGGACACGATCGCGCGTCCGGCACGAGTGCGCATCCGCAAGCGGAAGCCATGCACGCGGGCTCGGCGCCGGTTATTCGGCTGGAAGGTCCGCTTGCCCTTGGCCACGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGAAAGATTTTCCGTTCCGGTCACACTCGGCTCCGGGGTGACTACGATAACGACCCGAACCAAGGCCCCACTCACCCTAAACGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAGCAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAdnaA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AACGACCCGA

StartP-valueSite
5169.49e-07ACTCACCCTAAACGACCCGATTGGAATGCA
4859.49e-07TGACTACGATAACGACCCGAACCAAGGCCC
574.46e-06AGCACCGCCGAAAGACCTGACCCGCGATCA
6105.50e-06AGCGCTCGACAACGAAGCGAGGATGGTGGA

Motif TARCTDYBKVSAMARYCKTTT

StartP-valueSite
7392.85e-11CACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAG
6353.40e-11GTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCT
5682.27e-10GGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAG

Motif GTCAAA

StartP-valueSite
3971.05e-04CCCTCGCCTGGTCAAACCTGGCCTGC
71.05e-04CGTCGCGTCAAACTCAATTGAC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010627 100.0 852 0 0 1 852 1 852 0.0 1574
ORI95011026 99.648 852 3 0 1 852 19 870 0.0 1557
ORI96010622 99.648 852 3 0 1 852 19 870 0.0 1557
ORI95011027 99.639 831 3 0 22 852 1 831 0.0 1519
ORI96010623 98.74 635 8 0 218 852 1 635 0.0 1129
ORI60040083 90.596 638 48 11 218 848 1 633 0.0 835
ORI94040332 87.903 124 13 2 286 409 80 201 2.2e-35 145
ORI92310403 83.453 139 17 3 282 417 56 191 2.87e-29 124
ORI96040579 73.977 342 54 18 540 852 301 636 1.04e-23 106