DoriC

RefSeq

NC_017904.1

Accession number

NC_017904.1

DoriC accession number

ORI96010623

OriC length

745 nt

OriC AT content

0.381208

The location of oriC region

5613051..169 nt

Browse in NCBI

OriC map

OriC sequences

rpmHGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGCAAGATTTTCCGTTCCGATCACACTCGGCTGCGACGTGACTACGATAACGACCCGAACCAAGGCCCCACCCACCCTAAGCGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAACAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAGTGTGGAATGCGGTCGTTTCCGAGCTCAACGGTGACCCGACCGCGGACGGCGTAGCCGCCAACCGCACCACTGGTGACTCCCCTCACCGCAGCAACGGGCGTGGCTGAATdnaA

rpmhGACGTTCTCCTCGTTGTTTGCCATCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTCCGACCGGAGGTGGTCTTGCTGCTGCTGGCCGGCGCGGTCCCCGGGTGGTTCCGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCCTCGCCTGGTCAAACCTGGCCTGCCGCAACGCCGCCGCGCGGACCCGGCGCAAGATTTTCCGTTCCGATCACACTCGGCTGCGACGTGACTACGATAACGACCCGAACCAAGGCCCCACCCACCCTAAGCGACCCGATTGGAATGCAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAAGTCGTTTTAGACTGAAACAGCGCTCGACAACGAAGCGAGGATGGTGGATCGACTAGCTGCCTAGACAACCTTTTTGGGTTTTCTTCCAGCGCGGAGATCGCGAGCCGTCGCCGGTAGGTTGTGGCTTGCAGACGACCACCCTGTCCACACCTGTGTATAACTATGTGGACAGCCGTTTCGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAACCAGGGAGATGCGTCGTTGACCGATGACCCCGGTTCAGGCTTCACGACAGTGTGGAATGCGGTCGTTTCCGAGCTCAACGGTGACCCGACCGCGGACGGCGTAGCCGCCAACCGCACCACTGGTGACTCCCCTCACCGCAGCAACGGGCGTGGCTGAATdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TARCTDYBKVSAMARYCKTTT

Start	P-value		Site
522	4.33e-11	CACCTGTGTA	TAACTATGTGGACAGCCGTTT	CGTCGCCAAG
418	4.33e-11	GTGGATCGAC	TAGCTGCCTAGACAACCTTTT	TGGGTTTTCT
351	2.77e-10	GGAAAACTGT	TAGCTTCTGCCAAAGTCGTTT	TAGACTGAAA

Motif WCGABAACSA

Start	P-value		Site
388	1.58e-06	GAAACAGCGC	TCGACAACGA	AGCGAGGATG
263	1.93e-06	CGACGTGACT	ACGATAACGA	CCCGAACCAA
580	4.64e-06	CCCGGGACGT	TCGAGAACCA	GGGAGATGCG

Motif GTKTGGMATGCRGHCG

Start	P-value		Site
636	9.54e-09	CTTCACGACA	GTGTGGAATGCGGTCG	TTTCCGAGCT
307	3.47e-08	TAAGCGACCC	GATTGGAATGCAGCGG	AACGGTTGGC
483	1.21e-07	CGCCGGTAGG	TTGTGGCTTGCAGACG	ACCACCCTGT
16	1.57e-07	TCTCCTCGTT	GTTTGCCATCCGGCCG	CTCAGACGGT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI96010623	100.0	745	0	0	1	745	1	745	0.0	1376
ORI96010627	98.74	635	8	0	1	635	218	852	0.0	1129
ORI95011027	98.425	635	10	0	1	635	197	831	0.0	1118
ORI95011026	98.268	635	11	0	1	635	236	870	0.0	1112
ORI96010622	98.268	635	11	0	1	635	236	870	0.0	1112
ORI60040083	90.141	639	49	12	1	631	1	633	0.0	819
ORI96040579	75.526	380	58	18	323	673	301	674	3.18e-38	154
ORI94040332	87.903	124	13	2	69	192	80	201	1.92e-35	145
ORI92310403	83.453	139	17	3	65	200	56	191	2.5e-29	124