ORI97207396 | DoriC 14.0: an updated database of prokaryotic replication origins with significantly expanded plasmid oriV annotations

Basic Information

Assembly acc	`GCF_010729105.1`
Acc	`NZ_AP022573.1`
OriID	ORI97207396
Organism	Mycobacterium saskatchewanense
Topology	Circular
Lineage	Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium saskatchewanense
Assembly Level	Complete
Literature linkage	Not linked
Chromosome size	6008916 nt
Chromosome GC content	68.28%
Indicator genes	rpmH 3550992... 3551135nt dnaA 3551756... 3553282nt dnaN 3553769... 3554968nt hemB 4461055... 4462044nt hemE 5948909... 5949970nt
OriC location	3553283 ... 3553768 nt
OriC Length	486 nt
OriC AT Content	0.4033

Comparative Sequence Support

Recurrence category Singleton

Sequence cluster BC-OH011273

Cluster members 1

Distinct accessions 1

Species / genera 1 / 1

Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank	Ori ID	Accession	Organism	Identity	Reciprocal coverage	Literature linkage
1	`ORI97207326`	`NZ_AP018164.1`	Mycobacterium shigaense	73.30%	81.70%	Not linked
2	`ORI97249127`	`NZ_CP022927.1`	Mycobacterium shigaense	73.30%	81.70%	Not linked
3	`ORI97268660`	`NZ_CP157314.1`	Mycobacterium shigaense	73.30%	81.70%	Not linked
4	`ORI97207411`	`NZ_AP022587.1`	Mycobacterium stomatepiae	72.50%	81.70%	Not linked
5	`ORI97207401`	`NZ_AP022576.1`	Mycobacterium florentinum	72.30%	79.60%	Not linked
6	`ORI97209974`	`NZ_CP092423.1`	Mycobacterium lentiflavum	73.50%	76.70%	Not linked
7	`ORI97278294`	`NZ_CM141436.1`	Mycobacterium cajalii	70.90%	77.20%	Not linked
8	`ORI97261291`	`NZ_CP113116.1`	Mycobacterium sp. Aquia_213	72.50%	75.40%	Not linked
9	`ORI97261467`	`NZ_CP113529.1`	Mycobacterium sp. Aquia_216	72.20%	75.40%	Not linked
10	`ORI97207437`	`NZ_AP022615.1`	Mycobacterium heidelbergense	72.40%	74.30%	Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Replication Initiation Protein Information

Gene Start	Gene End	Translation
3551756	3553282	MTDDPGSSFTTVWNAVVSEL...

OriC Visualization

OriC map

OriC sequences

dnaATTCTCGGCTGCTGCCAACTTCTTTCGAAAAACTTCCCGCACCTCTGTCACACCAGTCACAGCCGGACGCTGTGCGCAGCGCTGTGCACAACGCAAACAAACAACAGTGCAACAAACTCCCGCTGCGCACACCGCCCCCGCACATCCCCAGCCGCCGACCGCGCGACACACACTTGTCCACGTTGTCATCCACAGCGCACCGACGCCCCTAGCTGCGCCGGGGCCGTGCTGTCCCCAGCATGCACAGTCCTTATTACTGTTACTGAGATATCTCCATGGGTTTCTCTTCGAAGAACGGTCCTGGGGAACCACTCGGGAACCTTCGTGCACACCACCCCATCGAGCCTTCGCCGGCCCGGCTTGTCGGCCTTCTCGATTAGCTTTCAAGATGAGCTCAGAAGCTCTACGGTTGTTCTTCGACTCCCCGTATCGGTGCGGGGGACTGGTCACCGAATCGGTGAACGCTTTGGGTAGGTGAAGGGACGCTdnaN

dnaaTTCTCGGCTGCTGCCAACTTCTTTCGAAAAACTTCCCGCACCTCTGTCACACCAGTCACAGCCGGACGCTGTGCGCAGCGCTGTGCACAACGCAAACAAACAACAGTGCAACAAACTCCCGCTGCGCACACCGCCCCCGCACATCCCCAGCCGCCGACCGCGCGACACACACTTGTCCACGTTGTCATCCACAGCGCACCGACGCCCCTAGCTGCGCCGGGGCCGTGCTGTCCCCAGCATGCACAGTCCTTATTACTGTTACTGAGATATCTCCATGGGTTTCTCTTCGAAGAACGGTCCTGGGGAACCACTCGGGAACCTTCGTGCACACCACCCCATCGAGCCTTCGCCGGCCCGGCTTGTCGGCCTTCTCGATTAGCTTTCAAGATGAGCTCAGAAGCTCTACGGTTGTTCTTCGACTCCCCGTATCGGTGCGGGGGACTGGTCACCGAATCGGTGAACGCTTTGGGTAGGTGAAGGGACGCTdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

BLAST Results

There are no BLAST results available for this genome.

Return to browse page