ORI97207411 | DoriC 14.0: an updated database of prokaryotic replication origins with significantly expanded plasmid oriV annotations

Basic Information

Assembly acc	`GCF_010731715.1`
Acc	`NZ_AP022587.1`
OriID	ORI97207411
Organism	Mycobacterium stomatepiae
Topology	Circular
Lineage	Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium stomatepiae
Assembly Level	Complete
Literature linkage	Not linked
Chromosome size	6210822 nt
Chromosome GC content	65.96%
Indicator genes	hemE 1561470... 1562519nt hemB 3182986... 3183969nt dnaN 4016414... 4017613nt dnaA 4018101... 4019624nt rpmH 4020193... 4020336nt
OriC location	4017614 ... 4018100 nt
OriC Length	487 nt
OriC AT Content	0.4148

Comparative Sequence Support

Recurrence category Cross-taxon

Sequence cluster BC-OH001297

Cluster members 5

Distinct accessions 5

Species / genera 5 / 1

Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank	Ori ID	Accession	Organism	Identity	Reciprocal coverage	Literature linkage
1	`ORI97207401`	`NZ_AP022576.1`	Mycobacterium florentinum	85.20%	100.00%	Not linked
2	`ORI97207326`	`NZ_AP018164.1`	Mycobacterium shigaense	75.70%	96.70%	Not linked
3	`ORI97249127`	`NZ_CP022927.1`	Mycobacterium shigaense	75.70%	96.70%	Not linked
4	`ORI97268660`	`NZ_CP157314.1`	Mycobacterium shigaense	75.70%	96.70%	Not linked
5	`ORI97207393`	`NZ_AP022568.1`	Mycobacterium simiae	78.60%	90.70%	Not linked
6	`ORI97261291`	`NZ_CP113116.1`	Mycobacterium sp. Aquia_213	86.90%	81.20%	Not linked
7	`ORI97261467`	`NZ_CP113529.1`	Mycobacterium sp. Aquia_216	86.70%	80.10%	Not linked
8	`ORI97209974`	`NZ_CP092423.1`	Mycobacterium lentiflavum	85.70%	78.00%	Not linked
9	`ORI97207396`	`NZ_AP022573.1`	Mycobacterium saskatchewanense	72.50%	81.70%	Not linked
10	`ORI97207406`	`NZ_AP022584.1`	Mycobacterium marseillense	71.80%	81.10%	Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Replication Initiation Protein Information

Gene Start	Gene End	Translation
4018101	4019624	MTDDPGSGFTTVWNAVVSEL...

OriC Visualization

OriC map

OriC sequences

dnaNAGCGTCCCTTCACCTACCAAAGTTCACAAACCGGCGGCCGGCTTTCGGCCCTGCTAGCCGCGACGCCCACAACGGGAGTCGAATCACAACCGTAGAGCTTCTGCGCCCATCTTGAAAGCTAATGGCGAAGGCCGACAAGCCGAGTGGAGGCGAGCTTGCCAGGCGCTGTGCAGCCCCGCGTCCCCAAACCTGTTCTTCAAAGAAGAAATGACGAAGAGATCTCAGTACCAGTATTAAGGCCTGTGCATTCTGGGGACAGATCGGGCTCGGTGCAGCTAGCGCGGCGATCGGCTTGTGGATGACACAGTTGGTAACTGTGCAGCCGGTGTTGGGCCGTTGGGGATGGTCCGGAGGTGTGCACGTCGGCGCCGATCGGTGCACTGTTGTTTGGCACGTTTGTACACAATGCTGCGCACACCGTCGGACTGTGACTGGAGTTACAGACGGGTGGGAAGTTTTTTGAAGAAGTTTGGCGCGCAGGCCGAAAdnaA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

BLAST Results

There are no BLAST results available for this genome.

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