Basic Information
| Assembly acc |
GCF_002356315.1
|
| Acc |
NZ_AP018164.1
|
| OriID | ORI97207326 |
| Organism | Mycobacterium shigaense |
| Topology | Circular |
| Lineage | Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium shigaense |
| Assembly Level | Complete |
| Literature linkage | Not linked |
| Chromosome size | 5232660 nt |
| Chromosome GC content | 67.26% |
| Indicator genes |
|
| OriC location |
|
| OriC Length |
|
| OriC AT Content |
|
Comparative Sequence Support
Recurrence category
Multi-accession
Sequence cluster
BC-OH001948
Cluster members
3
Distinct accessions
3
Species / genera
1 / 1
Literature-linked members
0
Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.
Top 10 most similar Ori IDs
| Rank | Ori ID | Accession | Organism | Identity | Reciprocal coverage | Literature linkage |
|---|---|---|---|---|---|---|
| 1 | ORI97249127 |
NZ_CP022927.1 |
Mycobacterium shigaense | 100.00% | 100.00% | Not linked |
| 2 | ORI97268660 |
NZ_CP157314.1 |
Mycobacterium shigaense | 100.00% | 100.00% | Not linked |
| 3 | ORI97207411 |
NZ_AP022587.1 |
Mycobacterium stomatepiae | 75.70% | 96.70% | Not linked |
| 4 | ORI97207393 |
NZ_AP022568.1 |
Mycobacterium simiae | 72.40% | 95.00% | Not linked |
| 5 | ORI97207396 |
NZ_AP022573.1 |
Mycobacterium saskatchewanense | 73.30% | 81.70% | Not linked |
| 6 | ORI97207401 |
NZ_AP022576.1 |
Mycobacterium florentinum | 73.10% | 81.80% | Not linked |
| 7 | ORI97278294 |
NZ_CM141436.1 |
Mycobacterium cajalii | 74.30% | 78.60% | Not linked |
| 8 | ORI97261291 |
NZ_CP113116.1 |
Mycobacterium sp. Aquia_213 | 75.10% | 77.50% | Not linked |
| 9 | ORI97261467 |
NZ_CP113529.1 |
Mycobacterium sp. Aquia_216 | 74.20% | 77.50% | Not linked |
| 10 | ORI97209974 |
NZ_CP092423.1 |
Mycobacterium lentiflavum | 75.20% | 74.90% | Not linked |
The interactive Z-curves rotated at the maximum of the GC disparity.
RIP Sequence-Similarity Network
Replication Initiation Protein Information
| Gene Start | Gene End | Translation |
|---|---|---|
| 1 | 1518 | MTDDSGSGFTTVWNAVVSEL... |
OriC Visualization
| OriC map | |
| OriC sequences |
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaaTTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnan
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
dnaATTTGTAACCCGCGATTCAAACTTTTTTCGAAAAACTTCCCACCCGTCTGTCACACGGGTCACACGCCGGCGGTGTGTGCAGGCCTGTGCACAACCCCCGCAAACCACCGTGCACTACTCCCGCACCAGTGCACATCTGTGATTCATCCCCACCCACCCAACACGGGCCACACAGTTGTGCACGCGGTCATCCACACCCCCACCGCTCCCCTAGCTGCACGGGAGTCCAATTGTCCCCAGAATGCACAGCCCTTAATACTGGTACTGAAATCTCTTCGTCCTTTCTTCTTTGAAGAACAGCCCTGGGGACACTTGGTTGCCGCAGGCTTGCAACCATCTCGACCACCCGGCTTGTCGGCCTCAGCGATTAGCTTTCAAGATGGCCGCAGACGATCTACGGTTGTTCTTCGACTCCCGGTTGCGGGAGCCCCACGCTAGCGGGGGACGAGGCTAGCCACTGGACTCGAATCTTTTGGTAGGTGAAGGGACGCTdnaN
5'-DnaA box-3'
3'-DnaA box-5'
Spacer
DnaA-trio
ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site |
BLAST Results
There are no BLAST results available for this genome.