ORI97209974 | DoriC 14.0: an updated database of prokaryotic replication origins with significantly expanded plasmid oriV annotations

Basic Information

Assembly acc	`GCF_022374895.2`
Acc	`NZ_CP092423.1`
OriID	ORI97209974
Organism	Mycobacterium lentiflavum
Topology	Circular
Lineage	Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium lentiflavum
Assembly Level	Complete
Literature linkage	Not linked
Chromosome size	5901792 nt
Chromosome GC content	66.04%
Indicator genes	dnaA 1... 1524nt dnaN 2062... 3261nt hemB 806082... 807062nt hemE 2094091... 2095140nt rpmH 5901027... 5901170nt
OriC location	1525 ... 2061 nt
OriC Length	537 nt
OriC AT Content	0.4246

Comparative Sequence Support

Recurrence category Cross-taxon

Sequence cluster BC-OH001297

Cluster members 5

Distinct accessions 5

Species / genera 5 / 1

Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank	Ori ID	Accession	Organism	Identity	Reciprocal coverage	Literature linkage
1	`ORI97261291`	`NZ_CP113116.1`	Mycobacterium sp. Aquia_213	84.50%	98.30%	Not linked
2	`ORI97261467`	`NZ_CP113529.1`	Mycobacterium sp. Aquia_216	84.60%	97.40%	Not linked
3	`ORI97207401`	`NZ_AP022576.1`	Mycobacterium florentinum	85.90%	87.20%	Not linked
4	`ORI97226948`	`NC_017904.1`	Mycobacterium sp. MOTT36Y	73.00%	98.70%	Not linked
5	`ORI97207490`	`NZ_AP024248.1`	Mycobacterium intracellulare	72.50%	98.90%	Not linked
6	`ORI97207492`	`NZ_AP024250.1`	Mycobacterium intracellulare	72.50%	98.90%	Not linked
7	`ORI97207516`	`NZ_AP024266.1`	Mycobacterium intracellulare	72.50%	98.90%	Not linked
8	`ORI97255048`	`NZ_CP085945.1`	Mycobacterium intracellulare	72.50%	98.90%	Not linked
9	`ORI97255261`	`NZ_CP089221.1`	Mycobacterium intracellulare	72.50%	98.90%	Not linked
10	`ORI97257005`	`NZ_CP076379.2`	Mycobacterium intracellulare	72.50%	98.90%	Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Replication Initiation Protein

Replication initiator protein not detected in sequence

OriC Visualization

OriC map

OriC sequences

dnaATTTCTGCGGTTTCGCCGCCACGTGCCAAACTTTTTTCAAAAAACTTCCCGCACGTCTGTAACTCCAGTCACAGCTGAGCGATGTGCGCAGCATTGTGTACAAACGTCCCATACCACCGTGCAGCAATCGGCGGTGACGTGCACACCGCCGACCCATCCCCAGTGGCCCAACATCGACTGCACAGTTACCAACGCCGTCATCCACAAGCCGATCGACCCGCTAGCTGCGCCGGACCGGACCTGTCCCCATCTTGCACAGGCCTTAATACTGGTACTGAGATCTATCCGTTGTTTCTTCTTTGAAGAACAGCCTTGGGGACGCGTCGCTGCACAGCGCTCACCGACCTCTCGTCGACTCGGCTTGTCGGCCTTAACGATTAGCTTTCAAGATGGGCGCAGAAGCTCTACGGTTGTGATTCGACTCCCGTTGTCGGACGTCTTGGCAGGTAACTTGCCTCGGCGTTCGTTGCGGGCCCCACGCTAGCGGGGAGCAAAGCTAGCCGCCGGATTTCGAACTTTGGGTAGGTGAAGGGACGCTdnaN

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

BLAST Results

There are no BLAST results available for this genome.

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