ORI97207401 | DoriC 14.0: an updated database of prokaryotic replication origins with significantly expanded plasmid oriV annotations

Basic Information

Assembly acc	`GCF_010730355.1`
Acc	`NZ_AP022576.1`
OriID	ORI97207401
Organism	Mycobacterium florentinum
Topology	Circular
Lineage	Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium florentinum
Assembly Level	Complete
Literature linkage	Not linked
Chromosome size	6219859 nt
Chromosome GC content	66.38%
Indicator genes	hemE 1466313... 1467362nt hemB 2876579... 2877559nt dnaN 3687913... 3689112nt dnaA 3689613... 3691136nt rpmH 3691748... 3691891nt
OriC location	3689113 ... 3689612 nt
OriC Length	500 nt
OriC AT Content	0.448

Comparative Sequence Support

Recurrence category Cross-taxon

Sequence cluster BC-OH001297

Cluster members 5

Distinct accessions 5

Species / genera 5 / 1

Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank	Ori ID	Accession	Organism	Identity	Reciprocal coverage	Literature linkage
1	`ORI97207411`	`NZ_AP022587.1`	Mycobacterium stomatepiae	85.20%	100.00%	Not linked
2	`ORI97261291`	`NZ_CP113116.1`	Mycobacterium sp. Aquia_213	89.50%	88.40%	Not linked
3	`ORI97261467`	`NZ_CP113529.1`	Mycobacterium sp. Aquia_216	87.90%	87.70%	Not linked
4	`ORI97209974`	`NZ_CP092423.1`	Mycobacterium lentiflavum	85.90%	87.20%	Not linked
5	`ORI97207393`	`NZ_AP022568.1`	Mycobacterium simiae	80.70%	82.30%	Not linked
6	`ORI97226948`	`NC_017904.1`	Mycobacterium sp. MOTT36Y	73.10%	87.10%	Not linked
7	`ORI97209622`	`NZ_CP080999.1`	Mycobacterium malmoense	73.30%	86.80%	Not linked
8	`ORI97255910`	`NZ_CP060015.1`	Mycobacterium malmoense	73.30%	86.80%	Not linked
9	`ORI97207406`	`NZ_AP022584.1`	Mycobacterium marseillense	72.90%	87.10%	Not linked
10	`ORI97227811`	`NZ_CP023147.1`	Mycobacterium marseillense	72.90%	87.10%	Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Replication Initiation Protein Information

Gene Start	Gene End	Translation
3689613	3691136	MTDDPGSGFTTVWNAVVSEL...

OriC Visualization

OriC map

OriC sequences

dnaNAGCGTCCCTTCACCTACCAAAGTTCAAAATCCAGGGCCCCGCAACGAACGTCCATGACGGGTAACGCGTCACGACGTCCACAACGGGAGTCGAATCACAACCGTAGAGCTTCTGCGCCCATCTTGAAAGCTAATCGCAAAGGCCGACAAGCCGAGTGGACGACAGCTTCGCGGGTGCTGTGTAGCGACGTGTCCCCAAACCTGTTCTTCAAAGAAGAAACAACGAATAGATCTCAGTACCAGTATTAAGGCCTGTGCATTCTGGGGACAGACCCACAGCGGTGCAGCTAGCACGGCGATCTGCTTGTGGATGACACGGTTGGTAACTGTGCAGCCGATGTTGGGCCACTGGGGATGGGTCGGCGGTGTGCAGGTCAGCCCAGATCGCTGCACTGTTATTTGGCACGTTTGTACACAATGCTGCGCACATCGTTGGGGTGTGACTGGAGTTACAGACGTGCGGGAAGTTTTTTGAAAAAGTTTGGCGCGCGGTGGCCGAAAdnaA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

BLAST Results

Subject ID	Identity (%)	Length	Mismatches	Gaps	Query Start	Query End	Subject Start	Subject End	E-value	Bit Score
ORI60040082	80.77%	208	35	5	66	270	478	273	0.0	158.0
ORI10040011	80.77%	208	35	5	66	270	478	273	0.0	158.0

Found 2 BLAST matches

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