DoriC

RefSeq

NC_013537

DoriC accession number

pORI00000168

OriC length

1319 nt

OriC AT content

0.5815

The location of oriC region

2240..3558 nt

Browse in NCBI

OriC map

OriC sequences

GATAAAAAACTCCCTCTGAGCTAGTTTTCTAGCGTTCTATTATTTTGGTTGGCACTTTAATAATAGCAGATGGAGTTTTTACCTGTCAAAAACACCTATAACCCTTGACAGACAAGGGCTGATTACTATTTTTTCGCCTTGAGATGTTTCTATATAGTATCAAGATAAGAAAAGACCCGATTTTGGCTATGCCAAAATCGCAAAAAAGCCCGCTGAAAACAGCAGGCTTTTTTAAAAACCCAAAAACCTCAAAACCCAAAGATTAAAACCGTTCTTCCCCCGTAGGGGGGAGATTTTGAGGCGTTATCATGAAAAAACGTACAGTCTTAATTACCACTGCTATTCTTGGATTGCTTCTTGTATCCGGCGGACATGATTTCGGAACAAAAGAGAATGGATATTTCGGCATATCAAAAGATTTCCAAACAGCAGAAAATGGAGCATTAGGCTAAAAATAAATGGCGGACTCCCCAGAGTCTGCTTTTTTTATTTTTAGATGCATTAAAGCCCGTATATGCGTTTTTAAGGACGTTCCCTTGTATAAGGTCAGTTTTTTATTAAAAGCCCTCAGAAACGAATCTGAGCATTTTCAGAGGCATTTCTCATTTCATCTCTCATGTTAGTATTAATAAAAAACCCGGAGGAACCAAAATTGAAAATCGAAACACTCTCTGAAGCAAAAAAGAAAATGAAAGAACTACTTTCTGATCCGCAGCTCAACTTACCGCAGCATTATCCGGAACGAAGCCCCAAAGGAATCATTTTGCTCGATCAAAACAACGAGTTACACAAAGAATTAAAGTAACTTGAGTGGGCTTTGCCCAAACCCACCAACGGACGGCCGTTGGATTCCAATATTTCAATCCCCCCAACCCCCCGCTTCTTCGGGGGGCTCCCTCGCCGGTTGGCGTCAAACAAACGGGTTTGTTTGAGTGCTAAAAGGGTTCGGGTGGCGCTGAGTGAGTCAACTCCTTAATCCTCCCTACGGTCCGGTTACCGTTGACTCACGCCAAGAGCGCCCGCTGCCCATTTAAAGATAAGACAGCTCCAGCGCTTTTCGTATGTATTCTTCTTCTGTGATTTCTCCATGAAACCGCCTTTCTAAAGCTTTTCCTCTTCTTCAGTCAGCACTAAGCCCTCAAAGCAAAGGGTTGCTCTTACATATCTCATTCCTGTTTCAAAATCACTCATTGGCACTCCCCCATAAACTAAATACAGTCCCAACCTGATAAAAGAACGGAACAGCTTTCTTTTTAAATGGCTCTAAATAAAGGGCTTTGCCCTCACTATAGCGAACCCTTTTTACGAGGTGATACGTT

AT-rich region

The information of repeat sequences

Motif SSCTCAAAACAAMGGGYT

Start	P-value		Site
1136	1.18e-09	CAGCACTAAG	CCCTCAAAGCAAAGGGTT	GCTCTTACAT
769	7.83e-09	TCATTTTGCT	CGATCAAAACAACGAGTT	ACACAAAGAA
1260	1.23e-08	CTTTTTAAAT	GGCTCTAAATAAAGGGCT	TTGCCCTCAC
908	1.42e-08	TCGCCGGTTG	GCGTCAAACAAACGGGTT	TGTTTGAGTG
211	1.95e-08	CAAAAAAGCC	CGCTGAAAACAGCAGGCT	TTTTTAAAAA

Motif TTYGGKKGGCDC

Start	P-value		Site
945	1.11e-08	GCTAAAAGGG	TTCGGGTGGCGC	TGAGTGAGTC
884	7.62e-08	CCCCCGCTTC	TTCGGGGGGCTC	CCTCGCCGGT
44	3.79e-07	GTTCTATTAT	TTTGGTTGGCAC	TTTAATAATA

Motif AHAAHAGAAAATGGA

Start	P-value		Site
384	3.01e-08	TGATTTCGGA	ACAAAAGAGAATGGA	TATTTCGGCA
426	5.56e-08	AGATTTCCAA	ACAGCAGAAAATGGA	GCATTAGGCT
679	1.65e-07	TCTCTGAAGC	AAAAAAGAAAATGAA	AGAACTACTT
60	2.98e-07	TGGCACTTTA	ATAATAGCAGATGGA	GTTTTTACCT
649	3.91e-07	CGGAGGAACC	AAAATTGAAAATCGA	AACACTCTCT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000168	100.0	1319	0	0	1	1319	1	1319	0.0	2436
pORI00000156	94.56	386	19	2	812	1196	668	284	0.0	595
pORI00000164	96.099	282	7	4	1039	1319	279	1	0.0	457
pORI00000164	95.146	206	7	3	814	1019	585	383	0.0	322
pORI00000164	84.014	294	34	5	4	297	1189	909	0.0	270
pORI00000165	85.891	404	47	7	614	1012	586	188	0.0	422
pORI00000167	81.544	298	39	8	4	297	294	9	0.0	231
pORI00000160	82.171	258	37	8	6	260	4	255	0.0	213
pORI00000158	82.692	208	31	5	4	207	5	211	1.4013e-45	180
pORI00000155	78.041	296	48	8	5	297	889	608	4.40008e-43	171
pORI00000166	97.674	43	1	0	969	1011	209	167	3.55e-14	75
pORI00000220	94.737	38	2	0	135	172	289	252	9.93e-10	60