DoriC

RefSeq

NC_001765

DoriC accession number

pORI00000164

OriC length

1194 nt

OriC AT content

0.5821

The location of oriC region

4779..165 nt

Browse in NCBI

OriC map

OriC sequences

AACGTATCACCTCGTAAAAAGGGTTCGCTATAGTGAGGGCAAAGCCTTTATTTAGAGCCATTTAAAAAGAAAGCTGTTCCGTTCTTTTATCAGGTTGGGACTGTATTTAGTTTATGGGGGAGTGCCAATGAGTGATTTTGAAACAGGAATGAGATATGTAAGAGCAACCCTTGGCTTTGAGGGTTTAGTGCTGACGGAAGAAGAGGAAAAGCTTTTAGAAAGACGGTTTCATGGAGAAATCACAGAGGAAGAATACATACAAAAAGCGTTGAGCTTCTTGATGTGATGTACCTGCAGGGCTTATAATATTCATAGCTGTTGTTAGAACCTAAACCCTTTTACCGTTTTTGGCGGTGAGGGTTCTTTTTTTTTAGGCAGTGATGCGATTTTGGCGTGAGTCAACGGTAACCGGACCGTAGGGAGGATTAAGGAGTTGACTCGCTCAGCGCCACCCGAACCCTTTCAGCACTCAAACAAACCCGTTTGTTTGACGCCAACCGGCAGGGAGCCCCCCGAAGAAGCGGGGGTTGGGGGGATTGAATGCTGGCATCCAACGGCCGTCCGTTGGTGGGTTTGGGCAAAGCCAAGAACTGTTGCAAGGCTCGTTGAGAATAAAGAATGCTTTTCAGGATGCTTAGAATCGTTTCTGAGAGCTTCAAATAAAAAAGATGACCTTTTATAGGGGGAAGCTCTTAAAATTGAATGTAGGGGCATTTAAACACGTTTAAAAATAAAAAAAGCAGACTCTTTAGAGTCCGCCTTGTTATTTTTAACCCAGTGCTCCATTTTCGGCTGTTTGGAAATCTTTTGAGATGCCGAACCATCCATTTTCTTTTGTTCCATGAAAAAAGTGCTTTTGGATGCTTAAAAAGGCTTTTTCGTATAAAAAAAGCCCGATTTTTGAAAAAAAAATCTCCCCCCCTGCGGAAGAATGGTTTTGATCTTTGGGTTTTAGGTTTTAAAAAAAGCCGGCTGTTTTCAGCCGGTTTTTTTCGATTTTGGCGGACGGAAATCGGGTCTTTTCTTATCTTGATACTATATAGAAACATCTCAAGGCGAAAAAATAGCCCCCATCCCTTATTTGTCAAGGGTTTGACGGCTTTTTGACATGTAGAAACTCCTTCCGCTATTATTAAAGTGCCCACTAAAATAATAGAATGCTAGATTACTAGCTCAGAAGGAGTTTTTTTGTTC

AT-rich region

The information of repeat sequences

Motif AAAAAAAGCCGDCTBTTTDNAG

Start	P-value		Site
961	6.58e-12	TTTAGGTTTT	AAAAAAAGCCGGCTGTTTTCAG	CCGGTTTTTT
733	1.27e-10	GTTTAAAAAT	AAAAAAAGCAGACTCTTTAGAG	TCCGCCTTGT
885	9.96e-10	TTTTTCGTAT	AAAAAAAGCCCGATTTTTGAAA	AAAAAATCTC
472	2.83e-09	TTCAGCACTC	AAACAAACCCGTTTGTTTGACG	CCAACCGGCA
661	8.82e-09	GAGCTTCAAA	TAAAAAAGATGACCTTTTATAG	GGGGAAGCTC

Motif CGWTTTTGGCG

Start	P-value		Site
994	2.45e-07	CGGTTTTTTT	CGATTTTGGCG	GACGGAAATC
384	2.45e-07	GGCAGTGATG	CGATTTTGGCG	TGAGTCAACG
343	5.08e-07	ACCCTTTTAC	CGTTTTTGGCG	GTGAGGGTTC

Motif CCCCCC

Start	P-value		Site
916	3.29e-05	AAAAAAATCT	CCCCCC	CTGCGGAAGA
509	3.29e-05	CGGCAGGGAG	CCCCCC	GAAGAAGCGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000164	100.0	1194	0	0	1	1194	1	1194	0.0	2206
pORI00000168	96.099	282	7	4	1	279	1319	1039	0.0	457
pORI00000168	96.0	200	5	3	389	585	1013	814	0.0	322
pORI00000168	84.014	294	34	5	909	1189	297	4	0.0	270
pORI00000165	94.175	206	8	4	387	588	184	389	0.0	311
pORI00000156	92.958	213	12	3	383	592	462	674	0.0	307
pORI00000156	91.195	159	12	2	123	279	284	442	0.0	215
pORI00000167	83.618	293	37	10	906	1190	6	295	0.0	265
pORI00000160	80.508	354	53	13	843	1190	344	1	0.0	257
pORI00000166	95.302	149	5	2	286	433	62	209	0.0	235
pORI00000155	81.457	302	43	11	894	1188	594	889	0.0	235
pORI00000158	78.707	263	45	10	937	1194	257	1	1.84999e-41	165
pORI00000220	84.286	70	6	5	991	1058	223	289	6.94e-11	64