RefSeq NC_005311
DoriC accession number pORI00000160
OriC length 935 nt
OriC AT content 0.5989
The location of oriC region 6471..7405 nt
Browse in NCBI
OriC map
OriC sequences
AATAAAACTCCTTTCTGAGCTAGTTTTCTAGCGTTCTATTATTTTTGCCGACACTTAAATAATAGCAGAAGGAGTTTTTACCTGTCAAAAAAGGCTTGAAGCCTTGACAGACAAGGAATTGAAGCTGTTTTTTAAAATGACAGTGTTTCTATATAGTATCAAGATAAGAAAAGACTCGATTTTGGCCCCGCCAAAATCGCAAAAAACCGGCTTTTTAGCCGGCTTTTTTTAAAACCAAAAACCAAAAACCCCAAATCCCCCCCGAAGGGGGGAGATTTTTTTTCAAAAATCGGCTTTTTTCATACGAAAAAGCCTTTTTTGTGTCCAAAAACGCGCTTTTTTCAATTCCACATGTAAGCGATCGGTAACAAATTCGTTCTTTTCGGCTGAAAATCGGCCCGAAAGAGTTACACTTTCAAAATATTTTAAAGCCCCTGCGGGTACAATGCGATAGCATTATTTGAAACCATTCAGCACCTTCAGGTGCATAGATGGGCACTCCCCATCTCTTCAGATGTCGTGACCATGTCCTGATTGGGGCACAGCAAGTCCAAAAAGTGTCCTAAAGATGTCTTGTGTGCTTTTCTTCTCTTAAAAAATCGTTTAAAAGCCCTCTGAGCGTTTTTGAAGTATTCCGGCTCCTTTAAGTCGTGTTTTCCCAAAAAAGTCCTCAGAAACGATTCTGAGCATCCTCAGAGACATTTCTTTCTCTCTTACAGACTCTCAAACACAAAAAAAGACGGAACGCATACGTCCGTCTAATAAAACATCCCGCTGGTCATCACGTTGCATTTCGTATCGCAATCTGTGCATCGCTTTGAACTTCAGAAGAAAATCCAATCACACCCAGCGTTAATACTCCCAAAATGATGGCTGCTGACAAAAGGCTTTTACATTTCATACAGGAAATTCGCTCCTCACCTTGCTTTTTTTCA
AATAAAACTCCTTTCTGAGCTAGTTTTCTAGCGTTCTATTATTTTTGCCGACACTTAAATAATAGCAGAAGGAGTTTTTACCTGTCAAAAAAGGCTTGAAGCCTTGACAGACAAGGAATTGAAGCTGTTTTTTAAAATGACAGTGTTTCTATATAGTATCAAGATAAGAAAAGACTCGATTTTGGCCCCGCCAAAATCGCAAAAAACCGGCTTTTTAGCCGGCTTTTTTTAAAACCAAAAACCAAAAACCCCAAATCCCCCCCGAAGGGGGGAGATTTTTTTTCAAAAATCGGCTTTTTTCATACGAAAAAGCCTTTTTTGTGTCCAAAAACGCGCTTTTTTCAATTCCACATGTAAGCGATCGGTAACAAATTCGTTCTTTTCGGCTGAAAATCGGCCCGAAAGAGTTACACTTTCAAAATATTTTAAAGCCCCTGCGGGTACAATGCGATAGCATTATTTGAAACCATTCAGCACCTTCAGGTGCATAGATGGGCACTCCCCATCTCTTCAGATGTCGTGACCATGTCCTGATTGGGGCACAGCAAGTCCAAAAAGTGTCCTAAAGATGTCTTGTGTGCTTTTCTTCTCTTAAAAAATCGTTTAAAAGCCCTCTGAGCGTTTTTGAAGTATTCCGGCTCCTTTAAGTCGTGTTTTCCCAAAAAAGTCCTCAGAAACGATTCTGAGCATCCTCAGAGACATTTCTTTCTCTCTTACAGACTCTCAAACACAAAAAAAGACGGAACGCATACGTCCGTCTAATAAAACATCCCGCTGGTCATCACGTTGCATTTCGTATCGCAATCTGTGCATCGCTTTGAACTTCAGAAGAAAATCCAATCACACCCAGCGTTAATACTCCCAAAATGATGGCTGCTGACAAAAGGCTTTTACATTTCATACAGGAAATTCGCTCCTCACCTTGCTTTTTTTCA
AT-rich region
The information of repeat sequences

Motif MRMARANKSGDTTTTTDYBTCBVAAAAHNSGC

StartP-valueSite
3051.00e-12TTTTTTCATACGAAAAAGCCTTTTTTGTGTCCAAAAACGCGCTTTTTTCAAT
642.20e-12CTTAAATAATAGCAGAAGGAGTTTTTACCTGTCAAAAAAGGCTTGAAGCCTT
3675.36e-12AGCGATCGGTAACAAATTCGTTCTTTTCGGCTGAAAATCGGCCCGAAAGAGT
2631.25e-11AAATCCCCCCCGAAGGGGGGAGATTTTTTTTCAAAAATCGGCTTTTTTCATA
1691.93e-11TCAAGATAAGAAAAGACTCGATTTTGGCCCCGCCAAAATCGCAAAAAACCGG

Motif TCTGAGC

StartP-valueSite
6824.11e-05CAGAAACGATTCTGAGCATCCTCAGAG
6144.11e-05TTAAAAGCCCTCTGAGCGTTTTTGAAG
144.11e-05AAAACTCCTTTCTGAGCTAGTTTTCTA
8058.19e-05CGTATCGCAATCTGTGCATCGCTTTGA

Motif GHTBTYTAGCBTGCTTTTHTT

StartP-valueSite
2104.74e-11CAAAAAACCGGCTTTTTAGCCGGCTTTTTTTAAAACCAAAA
5681.29e-09GTGTCCTAAAGATGTCTTGTGTGCTTTTCTTCTCTTAAAAA
231.94e-09TTCTGAGCTAGTTTTCTAGCGTTCTATTATTTTTGCCGACA
9133.67e-09CAGGAAATTCGCTCCTCACCTTGCTTTTTTTCA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000160 100.0 935 0 0 1 935 1 935 0.0 1727
pORI00000158 95.255 274 8 4 662 935 944 1212 0.0 429
pORI00000158 79.6 250 43 7 5 250 9 254 8.54792e-44 172
pORI00000164 80.627 351 52 13 4 344 1187 843 0.0 257
pORI00000167 80.952 294 41 11 4 286 292 3 0.0 219
pORI00000168 82.171 258 37 8 4 255 6 260 0.0 213
pORI00000155 78.738 301 49 13 4 294 888 593 0.0 187
pORI00000220 92.308 39 2 1 144 182 279 242 3.25e-08 55