DoriC

RefSeq

NC_022993

DoriC accession number

pORI00000220

OriC length

713 nt

OriC AT content

0.54

The location of oriC region

1398..2110 nt

Browse in NCBI

OriC map

OriC sequences

CACTGCATCAGTGAGCGGTTTATGCCGCAGAAAAAAACGTAGTCTTTTGCGGTGGAGAACCCCTTCACGTACACTTGCGAAGGTGGACCCCGCAGGGGTGTTTTTCCCCTGCGGGGTGCGCCTTCGGGGAAGTGTGAAGGGGTGCAGGTTCCACCGCAAAAGGAAACGGCTTTTTTCGAGGAATAAAAAGCGAACGGCGGGCGGGGGGAACATGAAAAAAGCTTTCTGAATTTGGGGCGTGAAACGAGTTCTTTCTTATCTTGATACTATATAGAAACAATTCAAGGCGGAGAATCTGCCTCAAACGCTTGTGGCGCTTGGCTTTGGAGCGATTTTTGGGGGTGGACAGAGAAAAACCCCCTGTGTTAAAGTGAAATTGTCCAGATTTCACCAATCACAGAGGGTCTGAACCCTTCTGATTTCAAGAGAAACCAGAAAGGAGCCGTATTGAATTTATGCATATTAAGGATACCATCAATCGATTAGAACAATCAACTGTTAAATTCTTGGAAGATAGGACAAAAAGCGGGAAGAAAAGGGATTGGCAAGGTAAGAAACAACGGTCTTTGCTGACAGCTGAACATTTTAAGTGGGCAAAATTGACTAACAAAGCGGAACGCATGCGGGAATGTGCGGATACTCTTGTCTTTAAGCAGACAGATGAAGGGTTGAAGTTATATCAAGCGTGGTTCTGTAAAGTGAGGTTATGCCCT

AT-rich region

The information of repeat sequences

Motif CCCTKC

Start	P-value		Site
411	6.62e-05	AGGGTCTGAA	CCCTTC	TGATTTCAAG
61	6.62e-05	GGTGGAGAAC	CCCTTC	ACGTACACTT
107	1.42e-04	GGTGTTTTTC	CCCTGC	GGGGTGCGCC

Motif GKCTTT

Start	P-value		Site
645	1.77e-04	GGATACTCTT	GTCTTT	AAGCAGACAG
563	1.77e-04	AGAAACAACG	GTCTTT	GCTGACAGCT
42	1.77e-04	AAAAAACGTA	GTCTTT	TGCGGTGGAG
320	3.80e-04	TGTGGCGCTT	GGCTTT	GGAGCGATTT
168	3.80e-04	AAAAGGAAAC	GGCTTT	TTTCGAGGAA

Motif GTSCAGRTTYCACC

Start	P-value		Site
379	4.92e-09	AAGTGAAATT	GTCCAGATTTCACC	AATCACAGAG
142	6.47e-09	GTGTGAAGGG	GTGCAGGTTCCACC	GCAAAAGGAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000220	100.0	713	0	0	1	713	1	713	0.0	1317
pORI00000164	84.286	70	6	5	223	289	991	1058	4.1e-11	64
pORI00000168	94.737	38	2	0	252	289	172	135	5.31e-10	60
pORI00000158	92.5	40	2	1	242	280	187	148	6.87e-09	57
pORI00000160	92.308	39	2	1	242	279	182	144	2.47e-08	55
pORI00000155	100.0	29	0	0	252	280	722	750	2.47e-08	55
pORI00000167	83.333	60	6	4	223	279	93	151	8.88e-08	53