DoriC

RefSeq

NC_005308

DoriC accession number

pORI00000158

OriC length

1212 nt

OriC AT content

0.5891

The location of oriC region

5150..6361 nt

Browse in NCBI

OriC map

OriC sequences

GAAAAAAGAAACTCCCTTCTGAGCTAGTTCTCTAGCATTCTATTATTTTGATTGGACACCTTAATAATAGCAGAGGGAGTTTTGTTCTGTCAAAAACGGCCCAAACCCTTGACAGGTAAGGGCTAAGGGCTATTTTCGAAAATCTTGTTGTTTCTATATAGTATCAAGATAAGAAAAAACCCGATTTTGGCCCCGCCAAAATCGCATAAAATCGCCTGTTCCAGGCGATTTTTTAAAACCCCAAACCCGAAACCAAACCTCAAAACGAAAATCCACCCACTGAAGGGTGGATTTTTTGATAAAAAGCCCCCGCCGAAAAATACAGAGACGCACCAAAATTTTTGGTGCGTATAACTGGCACTCCACCATGACGATTCCTTTACCCGACAAAAAGTCGAATCATGTCGAATTCCCCAGAGGACCACCCGGGCGATCTTAGCATAGACATCAAAAACGTTTAAATGCCTCTAAAATCATTTTTACTACCTCCCGGTAGTTTTAGTCTCATTTTTGTCTAAAACGCCTCAGAAACGAATCTGAGAATTCTCAGGGGTATTTCTTCTCAAGATTCTCTATTCAAGACACAAAAAAAGACGGAACATGCGCCCGTCAACTAAAAGGATTATGGATTAGAATGTTGAGACAATCGTTTAGACATCACAAGTATACAAAAATGCTCCTGCCGGGGGCAAGTTCCGGCAAGAGCACATTCCTTCGCCAGGCAATCAACGAAAGGATCAGTCAAATTACTGCAGGAAAACACGTCTCTCCCCTGCTCCATTTTGACAAAACACTTAGCAAAAGGGTTCAAAAACAGAAACAATAACTATAGGTGGTGAAGACAACACCTATAGACAACTTTAGTATATACCTCTTAAACAGCTTTTATAAGCCCTCTGGACGTTTTTTTGGACCGAGAATGGTTTAAGTATCATTTCTCTTCAAAACGCCTCAGAAGCGAATCTAAGCATCCTCAGAAGCATTTCTTTCTTACAGACTCTCAAACACCAAAAAAGACGGAACGCATACGTCCGTCTAATAAAACATCCCGCTGGTCATCACGTTGCATTTCGTATCGCAATCTGTGCATCGCTTTGAACTTCAGAAGAAAATCCAATCACACCCAGCGTTAATACTCCCAAAATGATGGCTGCTGACAAAAGGCTCTTACATTTCATACAGGAAATTCGCTCCTCACCTTGCTTTTTTTCA

AT-rich region

The information of repeat sequences

Motif AAAYGCCTCWDAAACVAHTYTDABHABCCYCMGGDRBDTTTHTT

Start	P-value		Site
518	9.07e-22	TTTTTGTCTA	AAACGCCTCAGAAACGAATCTGAGAATTCTCAGGGGTATTTCTT	CTCAAGATTC
945	1.87e-19	TTTCTCTTCA	AAACGCCTCAGAAGCGAATCTAAGCATCCTCAGAAGCATTTCTT	TCTTACAGAC
866	1.18e-16	CAACTTTAGT	ATATACCTCTTAAACAGCTTTTATAAGCCCTCTGGACGTTTTTT	TGGACCGAGA
460	1.23e-16	AAAAACGTTT	AAATGCCTCTAAAATCATTTTTACTACCTCCCGGTAGTTTTAGT	CTCATTTTTG

Motif GGGSGATTTT

Start	P-value		Site
428	1.13e-06	AGGACCACCC	GGGCGATCTT	AGCATAGACA
127	2.26e-06	TAAGGGCTAA	GGGCTATTTT	CGAAAATCTT
286	2.91e-06	CCCACTGAAG	GGTGGATTTT	TTGATAAAAA
223	4.08e-06	CGCCTGTTCC	AGGCGATTTT	TTAAAACCCC
73	8.42e-06	AATAATAGCA	GAGGGAGTTT	TGTTCTGTCA

Motif AVAARAAAHYCSMWYCTSASCYHGY

Start	P-value		Site
4	2.71e-11	GAA	AAAAGAAACTCCCTTCTGAGCTAGT	TCTCTAGCAT
172	3.23e-11	TATCAAGATA	AGAAAAAACCCGATTTTGGCCCCGC	CAAAATCGCA
1104	3.39e-10	TTTGAACTTC	AGAAGAAAATCCAATCACACCCAGC	GTTAATACTC
1179	5.42e-10	TACATTTCAT	ACAGGAAATTCGCTCCTCACCTTGC	TTTTTTTCA
586	4.10e-09	TTCAAGACAC	AAAAAAAGACGGAACATGCGCCCGT	CAACTAAAAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000158	100.0	1212	0	0	1	1212	1	1212	0.0	2239
pORI00000160	95.255	274	8	4	944	1212	662	935	0.0	429
pORI00000160	79.6	250	43	7	9	254	5	250	1.12104e-43	172
pORI00000167	80.233	258	46	5	4	257	295	39	0.0	189
pORI00000168	82.692	208	31	5	5	211	4	207	0.0	180
pORI00000164	78.788	264	43	10	1	257	1194	937	1.87998e-41	165
pORI00000155	81.463	205	32	5	9	211	887	687	6.75005e-41	163
pORI00000220	92.5	40	2	1	148	187	280	242	1.18e-08	57