DoriC

RefSeq

NC_001370

DoriC accession number

pORI00000004

OriC length

371 nt

OriC AT content

0.6469

The location of oriC region

1..371 nt

Browse in NCBI

OriC map

OriC sequences

AAAAGCAGTTCAGCGGTTTTTGCTGATCTGCTTTTTGGGGTTTAAAAACGCCAATTTTTGGCGTTTTCTTCTTATCTTGATACTATTAGCAACAACTAGTTTTTTAAAATCAAGCTTGATTAGGCTTGATTAGGCTTGTATTCCTTGATTTTATAGGTTTTCGGTGTATTATTAGGGTTATAAATTGGTTGAAAGAAAGACAAAATAAAAACCCACGTGAAAATCTCCGATTGGCGTCCGAGCACGTGAGTTGTTTATCTTTTTCATTTGTAGCCTTTATTTTAGGTGTAAAAGCCTTTGGTGTCAAGGTTATAAGCTTATTGAAAAAAGATAGTCAGCTCCTTCACGTGGTAAAGCGGAAGGAGCTTTTT

AT-rich region

The information of repeat sequences

Motif CACGTG

Start	P-value		Site
345	9.37e-05	TCAGCTCCTT	CACGTG	GTAAAGCGGA
243	9.37e-05	GGCGTCCGAG	CACGTG	AGTTGTTTAT
214	9.37e-05	AATAAAAACC	CACGTG	AAAATCTCCG

Motif CTTGAT

Start	P-value		Site
144	4.29e-04	GCTTGTATTC	CTTGAT	TTTATAGGTT
125	4.29e-04	CTTGATTAGG	CTTGAT	TAGGCTTGTA
115	4.29e-04	TAAAATCAAG	CTTGAT	TAGGCTTGAT
76	4.29e-04	TTCTTCTTAT	CTTGAT	ACTATTAGCA

Motif AAAARC

Start	P-value		Site
290	1.66e-04	TTTTAGGTGT	AAAAGC	CTTTGGTGTC
1	1.66e-04	.	AAAAGC	AGTTCAGCGG
207	3.81e-04	AAGACAAAAT	AAAAAC	CCACGTGAAA
44	3.81e-04	TTTGGGGTTT	AAAAAC	GCCAATTTTT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000004	100.0	371	0	0	1	371	1	371	0.0	686
pORI00000460	99.461	371	1	1	1	371	786	1155	0.0	673
pORI00000042	91.27	378	20	12	1	371	786	1157	0.0	503
pORI00000368	91.005	378	20	13	1	371	737	1107	0.0	497
pORI00000197	80.309	259	30	15	1	252	286	530	2.8026e-45	176