DoriC

RefSeq

NC_010612.1

Accession number

NC_010612.1

DoriC accession number

ORI92310403

OriC length

531 nt

OriC AT content

0.418079

The location of oriC region

6636297..6636827 nt

Browse in NCBI

OriC map

OriC sequences

rpmHGACATTCTCCTCGGTGTCTCTGGCATAACCAACCGGCCGCCAACATCCTCACTGTCGGCCGGAGGTGGTCTCGCTACTGGCCGGCGCGGTCCCTCAATACAAGATTCAGGTCGCAGCCGCATCGCCTACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCTCCTGGTCAAACCTCGCCAGCCTCAATAGACCCACCCTGAACCGAGTCGACCGCCAAATCCGAGTCACAAAACCACCCTCACAGCCAACCCTCAACCGAATACCAGAGAACTGTTGGCAGCCGCACCGAAAACTGTTAGCTTCGGGCAGTGCTGTTTTCGGATTGAAACGGCGGCCGACAATGAAGCGAGGATGGCGGATCAACTAGCTGCCCAGACAACCGCTTGGTTGTACGCAGCGCGGAGATCGCGAGCCGTTGCCGATAGGCTGTGGCCCGCCATTGGTCGTCCTTTCCACACCTGTGCATAACGGTGTGGATAGTGTGGCCCATAATTCCACTGCTATGTCGGATCAGGGAGATGCGTCGdnaA

rpmhGACATTCTCCTCGGTGTCTCTGGCATAACCAACCGGCCGCCAACATCCTCACTGTCGGCCGGAGGTGGTCTCGCTACTGGCCGGCGCGGTCCCTCAATACAAGATTCAGGTCGCAGCCGCATCGCCTACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCTCCTGGTCAAACCTCGCCAGCCTCAATAGACCCACCCTGAACCGAGTCGACCGCCAAATCCGAGTCACAAAACCACCCTCACAGCCAACCCTCAACCGAATACCAGAGAACTGTTGGCAGCCGCACCGAAAACTGTTAGCTTCGGGCAGTGCTGTTTTCGGATTGAAACGGCGGCCGACAATGAAGCGAGGATGGCGGATCAACTAGCTGCCCAGACAACCGCTTGGTTGTACGCAGCGCGGAGATCGCGAGCCGTTGCCGATAGGCTGTGGCCCGCCATTGGTCGTCCTTTCCACACCTGTGCATAACGGTGTGGATAGTGTGGCCCATAATTCCACTGCTATGTCGGATCAGGGAGATGCGTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CVGAVAACTGTTDG

Start	P-value		Site
269	4.30e-08	AACCGAATAC	CAGAGAACTGTTGG	CAGCCGCACC
291	8.84e-08	GGCAGCCGCA	CCGAAAACTGTTAG	CTTCGGGCAG
378	2.82e-07	ACTAGCTGCC	CAGACAACCGCTTG	GTTGTACGCA
133	4.17e-07	CGCCTACTTT	CGGGCGACTGTTTG	AGGGTACTGA

Motif CAGCCKCA

Start	P-value		Site
183	2.47e-05	CAAACCTCGC	CAGCCTCA	ATAGACCCAC
283	5.73e-05	GAACTGTTGG	CAGCCGCA	CCGAAAACTG
114	5.73e-05	ATTCAGGTCG	CAGCCGCA	TCGCCTACTT
44	7.60e-05	CGGCCGCCAA	CATCCTCA	CTGTCGGCCG
239	1.05e-04	GTCACAAAAC	CACCCTCA	CAGCCAACCC

Motif TKKCGGAT

Start	P-value		Site
321	8.09e-06	GCAGTGCTGT	TTTCGGAT	TGAAACGGCG
509	2.95e-05	TCCACTGCTA	TGTCGGAT	CAGGGAGATG
358	4.36e-05	GAAGCGAGGA	TGGCGGAT	CAACTAGCTG
421	7.83e-05	TCGCGAGCCG	TTGCCGAT	AGGCTGTGGC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92310403	100.0	531	0	0	1	531	1	531	0.0	981
ORI60040083	84.507	142	13	9	55	191	64	201	1.06e-31	132
ORI96010627	83.571	140	15	5	56	191	282	417	1.77e-29	124
ORI96010623	83.571	140	15	5	56	191	65	200	1.77e-29	124
ORI95011027	83.571	140	15	5	56	191	261	396	1.77e-29	124
ORI95011026	82.734	139	18	4	56	191	300	435	8.22e-28	119
ORI96010622	82.734	139	18	4	56	191	300	435	8.22e-28	119