DoriC

RefSeq

NC_014297.1

DoriC accession number

aORI10010167

OriC length

662 nt

OriC AT content

0.4668

The location of oriC region

137620..138281 nt

Browse in NCBI

OriC map

OriC sequences

CCTGTCCTCCCGCGCCAGACGGCGCGTCCATGCGCGTAGACGAATAGTCAGGAGTACTTAAGCCTGCGTCAGACATACCTACAATAGATTATATAACGTCGTGCGGTGGCGATTCGGGAAGCGACTGCAGAAGTGACGGATCAGCGAAAGAAGCGTCCCAGCCGGTATCGACCTCACGAGAGGCCCATCACTCCCAACCCCCACCCCTTCGTTTCAACTGGAGACCGGTGGAGGAACGAGGCTGATCTCCGGATGGGAGTTAATTCCACTAGCTAATATTATCTATATAATATTATTTCTAGTTGAATTCATATCTGCTACTGCAGTACGGATATGGTTGTTCTGTGTTTGACTTAGCTGTTTCCCTTCTAGAACGACCACGGGAGGGGGGGGACTCTTGAGCGGTTCCAGTTGAAACGAAGGGGTGGGGGGGTTCGAACTCGTCTCGATAAACGTCTCTTCGTCGCGAGGGGAGGATTCGATCGCTAAAGACAGTTTTAATACCCTCGATTACCTTGAGTTCGCCTGCATCGACTGACGACCGACCAGCATCCGTATCCCGAGTGAACCGGTGTCTCGACTCCTCTCCGCTGTGATTCGGGGATGCGCGTTCTGGACTCCAGTTGAAACAAAGGGGTACGCCGGTCGCGGTTCACCAATCC

ORB AT-rich region

The information of repeat sequences

Motif TVCANTHGAWWMNMDDGNGTNSGSSKGTNBCGAYTC

Start	P-value		Site
619	2.28e-15	CGTTCTGGAC	TCCAGTTGAAACAAAGGGGTACGCCGGTCGCGGTTC	ACCAATCC
407	8.86e-13	CTTGAGCGGT	TCCAGTTGAAACGAAGGGGTGGGGGGGTTCGAACTC	GTCTCGATAA
80	1.51e-12	CAGACATACC	TACAATAGATTATATAACGTCGTGCGGTGGCGATTC	GGGAAGCGAC
502	9.38e-12	ACAGTTTTAA	TACCCTCGATTACCTTGAGTTCGCCTGCATCGACTG	ACGACCGACC
548	2.28e-11	ACGACCGACC	AGCATCCGTATCCCGAGTGAACCGGTGTCTCGACTC	CTCTCCGCTG

Motif TAATATTAT

Start	P-value		Site
288	2.11e-06	ATTATCTATA	TAATATTAT	TTCTAGTTGA
274	2.11e-06	TTCCACTAGC	TAATATTAT	CTATATAATA

Motif TCGMTAAA

Start	P-value		Site
446	1.09e-05	CGAACTCGTC	TCGATAAA	CGTCTCTTCG
483	2.33e-05	GAGGATTCGA	TCGCTAAA	GACAGTTTTA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010167	100.0	662	0	0	1	662	1	662	0.0	1223
aORI10010160	97.059	34	1	0	197	230	375	408	5.14e-10	58