DoriC

RefSeq

NC_010260

DoriC accession number

pORI00000029

OriC length

1364 nt

OriC AT content

0.618

The location of oriC region

1765..85 nt

Browse in NCBI

OriC map

OriC sequences

AAACTGCTTTTCCTTCCTGTGTTTTTTGGTAATTGTTATATTTAGGATTTATGATTATTTCCTTTCTAACCTAAATAATTTTTTAATATTGAATCCGCTTTCATTATACTACTTGTCATTTCCGATGTCTATTATTTTAAGGTTTTATCCAACAATAATGACTTAGCGGAAGGCACAAAAATAGTCGCAATATGGAATGCAACTAAGCAAAATTATTTTTTGAAGTAGTTTTGTTTTTATTTCAGGCAAGCAACGGGTTTGTCCGTACAAACCCTAAAAAACAGAATTTTTGTCTTGTTAGGATTCTCCTAAAACCGTAATAAAAAAGATCAACATTAGTTTAAAAATGCTGGTCTTTTTTTGATGTCTTTGCATTCGATTTTTTTACTCACTGACGTTCGTATGATTCCATATTTTTGTTGGAAAGTATTCCAACAAAAATATGGAATGGCAATCATTTAGTCGAGCGTAGCGACAAATTCAGGTGACATAATCTGAATAAGGTCTTAGGGACCCTAGCAAGTCATTTAAGCGGTTTGTGTATACAAACCCGTTGCTTGCCTGAATCAGATTGTAAAATGGCTTAGAAAGCAAATATGAGCCTTCTGAGAGGTTTTAGAGATAAACTAAGCGATTTATGCCGTGAAAGCTCCTTGACGATAAGCAGGGACAAGGTAGACTTAGCTGGGGCGGTTCGGTCAGAACTTTGTTCGACCGACCGACAAAGCAAGTATCACCGTCCCTGGTTTCTTGTTGTCAAGGAGACCATGGAATAAAGCAAGCGTGCATGATATAATAACCAAGTCGCATTCACTAAACAGCGAAAGTTGGGAGGTGAAACTTTATGCTAAAAGTATTTCTTGAACTTGTTTTGCTACCGCTGACTGTCAGTGTAGTTGCAGAACTAATTGCGGAGTGGTTAATCCGCATGTGGCAAAACAAAGGCGACAAATAACTTAACCTGAGCACCTTGAGCAAGTGCAACAAAAACACCTAGGTTCCCCCCTAGGTGTTTTCTTTATGCTTATATTTCTTGAACTTTTAAGCACCTTCATTGTATCATGTGTAGGATAAGGTGTCAAAAAATTGGGTTGGGTGGAGCAATTTTTGAGGGGGATTTTTCGGTAGAAAAATCCAGAATATGGGGGGGCTACTACGACCCCCCATATAGTGCCGAGTGCCAATTTCAAAAAAAAACAGGCCTTAGCCTTAGAGCCCCAAGGGTTTAGCGGTTGCGAGTTTTCGGCGAGTTTTCGGCGAGTTTTCGGGCGAATTTAGCGAATTCCTCTAAAAAAATACGAAAAACATTGCATTCAATGCGTATTTGTGCTACTATGGTTTTATAAAAATTTGAGAGGTGACTC

AT-rich region

The information of repeat sequences

Motif GCGAGTTTTCG

Start	P-value		Site
1257	1.76e-07	CGAGTTTTCG	GCGAGTTTTCG	GGCGAATTTA
1246	1.76e-07	CGAGTTTTCG	GCGAGTTTTCG	GCGAGTTTTC
1235	1.76e-07	TTTAGCGGTT	GCGAGTTTTCG	GCGAGTTTTC
1114	9.83e-07	ATTTTTGAGG	GGGATTTTTCG	GTAGAAAAAT

Motif SCRACAAA

Start	P-value		Site
945	1.03e-05	CAAAACAAAG	GCGACAAA	TAACTTAACC
472	1.03e-05	GTCGAGCGTA	GCGACAAA	TTCAGGTGAC
719	1.88e-05	GTTCGACCGA	CCGACAAA	GCAAGTATCA
981	3.35e-05	TTGAGCAAGT	GCAACAAA	AACACCTAGG
432	4.57e-05	GGAAAGTATT	CCAACAAA	AATATGGAAT

Motif CADAAWMNGGGTTTGBBCNTASRRMCCC

Start	P-value		Site
247	3.29e-13	TTATTTCAGG	CAAGCAACGGGTTTGTCCGTACAAACCC	TAAAAAACAG
1136	1.03e-10	TAGAAAAATC	CAGAATATGGGGGGGCTACTACGACCCC	CCATATAGTG
1192	1.33e-10	CAATTTCAAA	AAAAAACAGGCCTTAGCCTTAGAGCCCC	AAGGGTTTAG
489	3.54e-10	ATTCAGGTGA	CATAATCTGAATAAGGTCTTAGGGACCC	TAGCAAGTCA
525	5.90e-10	CCTAGCAAGT	CATTTAAGCGGTTTGTGTATACAAACCC	GTTGCTTGCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000029	100.0	1364	0	0	1	1364	1	1364	0.0	2519
pORI00000028	97.95	1366	22	5	1	1364	1	1362	0.0	2362
pORI00000028	100.0	30	0	0	987	1016	1017	988	1.33e-08	57
pORI00000002	93.435	853	52	3	235	1086	227	1076	0.0	1262
pORI00000083	93.782	788	40	8	1	784	1	783	0.0	1175
pORI00000217	89.56	910	84	11	458	1363	336	1238	0.0	1144
pORI00000084	95.477	398	10	7	970	1364	95	487	0.0	628
pORI00000295	88.552	297	32	2	353	648	129	424	0.0	359
pORI00000495	82.168	286	34	13	789	1060	571	289	0.0	230