DoriC

RefSeq

NC_010230

DoriC accession number

pORI00000028

OriC length

1362 nt

OriC AT content

0.6226

The location of oriC region

1765..85 nt

Browse in NCBI

OriC map

OriC sequences

AAACTGCTTTTCCTTCCTGTGTTTTTGGTAATTGTTATATTTAGGATTTATGATTATTTCCTTTCTAACCTAAATAATTTTGTAATATTGAATCCGCTTTCATTATACTACTTGTCATTTCCGATGTCTATTATTTTAAGGTTTTATCCAACAATAATGACTTAGCGGAAGGCACAAAAATAGTCGCAATATGGAATGCAACTAAGCAAAATTATTTTTTGAAGTAGTTTTGTTTTTATTTCAGGCAAGCAACGGGTTTGTACGGACAAAACCTAAAAAACAGAATTTTTGTCTTGTTAGGATTCTCCTAAAACCGTAATAAAAAAGATCAACATTAGTTTAAAAATGCTGGTCTTTTTTTGATGTCTTTGCATTCGATTTTTTTACTCACTGACGTTCGTATGATTCCATATTTTTGTTGGAAAGTATTCCAACAAAAATATGGAATGGCAATCATTTAGTCGAGCGTAGCGACAAATTCAGGTGACATAATCTGAATAAGGTCTTAGGGACCCTAACAAGTCATTTAAGCGGTTTGTGTATACAACCCCGTTGCTTGCCTGAATCAGATTGTAAAATGGCTTAGAAAGCAAATATGAGCCTTCTGAGAGGTTTTAGAGATAAACTAAGCGATTTATGCCGTGAAAGCTCCTTGACGATAAGCAGGGACAAGGTAGACTTAGCTGGGGGCGGTTCGGTCAGAACTTTGTTCGACCGACCGACAAAGCAAGTATTACCGTCCCTGGTTTCTTGTTGTCAAGGAGACCATGGAATAAAGCAAGCGTGCATGATATAATAACCAAGTCGCATTCACTAAACAGCGAAAGTTGGGAGGTGAAACTTTATGCTAAAAGTATTTCTTGAACTTGTTTTGCTACCGCTGACTGTCAGTGTAGTTGCAGAACTAATTGCGGAGTGGTTAATTCGCATGTGGCAAAACAAAGGCGACAAATAACTTAACCTGAGCACCTTGAGCAAGTGCAACAAAAAACACCTAGGGGGGAACCTAGGTGTTTTCTTTATGCTTATATTTCTTGAACTTTTAAGCACCTTCATTGTATCACGTGTAAGATAAGGTGTCAAAAATTGGGTTGGGTGGAGCAATTTTTGAGGGGGATTTTTCGGTAGAAAAATCCAGAATATGGGGGCTACTACGACCCCCCATATAGTGCCGAGTGCCAATTTTTTAAAAAAACAGGCCTTAGCCTTAGAGCCCCAAGGGTTTAGCGGTTGCGAGTTTTCGGCGAGTTTTCGGCGAGTTTTCGGGTGAATTTAGTGAATTCCTCTAAAAAAATACGAAAAACATTGCATTTAATGCGTATTTGTGCTACTATGGTTTTATAAAAATTTGAGAGGTGACTC

AT-rich region

The information of repeat sequences

Motif GCGAGTTTTCG

Start	P-value		Site
1255	1.78e-07	CGAGTTTTCG	GCGAGTTTTCG	GGTGAATTTA
1244	1.78e-07	CGAGTTTTCG	GCGAGTTTTCG	GCGAGTTTTC
1233	1.78e-07	TTTAGCGGTT	GCGAGTTTTCG	GCGAGTTTTC
1114	1.02e-06	ATTTTTGAGG	GGGATTTTTCG	GTAGAAAAAT

Motif SSRACAADRWWSACYTAGSKGRRRRC

Start	P-value		Site
666	2.93e-13	ACGATAAGCA	GGGACAAGGTAGACTTAGCTGGGGGC	GGTTCGGTCA
148	3.69e-13	AAGGTTTTAT	CCAACAATAATGACTTAGCGGAAGGC	ACAAAAATAG
981	5.23e-13	TTGAGCAAGT	GCAACAAAAAACACCTAGGGGGGAAC	CTAGGTGTTT

Motif SCGACAAA

Start	P-value		Site
719	7.96e-06	GTTCGACCGA	CCGACAAA	GCAAGTATTA
945	1.81e-05	CAAAACAAAG	GCGACAAA	TAACTTAACC
471	1.81e-05	GTCGAGCGTA	GCGACAAA	TTCAGGTGAC
263	2.83e-05	CGGGTTTGTA	CGGACAAA	ACCTAAAAAA
431	3.96e-05	GGAAAGTATT	CCAACAAA	AATATGGAAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000028	100.0	1362	0	0	1	1362	1	1362	0.0	2516
pORI00000029	97.95	1366	22	5	1	1362	1	1364	0.0	2362
pORI00000029	100.0	30	0	0	988	1017	1016	987	1.33e-08	57
pORI00000002	92.74	854	56	6	234	1086	227	1075	0.0	1229
pORI00000083	93.782	788	40	8	1	784	1	783	0.0	1175
pORI00000217	88.999	909	90	10	457	1361	336	1238	0.0	1116
pORI00000084	93.687	396	19	5	970	1362	95	487	0.0	588
pORI00000295	88.552	297	32	2	352	647	129	424	0.0	359
pORI00000495	82.168	286	35	13	789	1061	571	289	0.0	231