DoriC

RefSeq

NC_015219

DoriC accession number

pORI00000495

OriC length

605 nt

OriC AT content

0.6545

The location of oriC region

20413..252 nt

Browse in NCBI

OriC map

OriC sequences

TTCTACACCCATAAGGTGGCATTTCTACACCCATAAGGTGGCATTTCTACACCCATAAGGTGGCATTTCTACACCCATAAAACTTGTAATCTGTTGGGGCTCTAAGGCTCATGAGTTACCTAAACATATATTAAATAATATTAAATATATATAAACACTCAGATTTTGATTTTTTCTGCGAAAAAAATCATCAATCTGCGAGTTATTTTCCATTCTGTATTTTCTTTTTTGATAGCCTTCTAAGTCGAACCTTAAAGACAAAAGTCTTGACAATATAAGTTATAACTTATATAATAAAGACGCTTAAAAGTTCGATAAAGCTAAGCATAAAGAAAACACCCTAGTGACTCGCAAAAAAACTAGGGTGTTTTTTTTGTGCCTTGCTCAAGGGCACTCAGGCTAGATTATTTATCGCATTTGTCATGCCACTTGCGGATTAGCCATTCCGCAATCAGTTCTGAACTGACACCGACAAACAGCGGTAGCAGAACAAGTTCGATAAAACATTTTAGCATAAAGTTTCACCTCCCAACTTTCGCTGTTTAGTGAATGCGACTTTATTATTATATCAAAACTTTTTTACTCTAACAAAATAATAGTCAAAC

AT-rich region

The information of repeat sequences

Motif TTCTACACCCATAAGGTGGC

Start	P-value		Site
45	4.09e-13	AAGGTGGCAT	TTCTACACCCATAAGGTGGC	ATTTCTACAC
23	4.09e-13	AAGGTGGCAT	TTCTACACCCATAAGGTGGC	ATTTCTACAC
1	4.09e-13	.	TTCTACACCCATAAGGTGGC	ATTTCTACAC
67	2.28e-10	AAGGTGGCAT	TTCTACACCCATAAAACTTG	TAATCTGTTG

Motif GGGCWCTMAGGCT

Start	P-value		Site
389	2.48e-09	CCTTGCTCAA	GGGCACTCAGGCT	AGATTATTTA
97	4.51e-09	TAATCTGTTG	GGGCTCTAAGGCT	CATGAGTTAC

Motif TCTGCG

Start	P-value		Site
195	8.88e-05	AAATCATCAA	TCTGCG	AGTTATTTTC
175	8.88e-05	TTTGATTTTT	TCTGCG	AAAAAAATCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000495	100.0	605	0	0	1	605	1	605	0.0	1118
pORI00000495	100.0	36	0	0	45	80	1	36	2.68e-12	68
pORI00000495	100.0	36	0	0	1	36	45	80	2.68e-12	68
pORI00000002	82.867	286	32	13	289	571	1050	779	0.0	241
pORI00000028	82.168	286	35	13	289	571	1061	789	0.0	231
pORI00000029	82.168	286	34	13	289	571	1060	789	0.0	230
pORI00000217	81.119	286	38	12	289	571	939	667	0.0	215