DoriC

RefSeq

NC_022076

DoriC accession number

pORI00000295

OriC length

624 nt

OriC AT content

0.6843

The location of oriC region

2118..2741 nt

Browse in NCBI

OriC map

OriC sequences

GAAAAAAAATAAAAAAGAGAAAATATATTATGTATGGTGCTATTTCTGCAGCTTTATTAGCACTTATAAAATATTTTTTCTTTAAGTAACTTGTATTTTTAAGACAAAGCATATTATAAATATGTTTTGTCTTTTTTAGTGTCATTATATTCGATTTTTTTACTTACTTAGCGTTCGTATGATTCTATTTTGTTGTTGTAAATTATTTCAACAACAAAATAGAATAGCAATCATTTAGTCGAGCGTAGCGACAAATTCAGATGACATCATCTCAATAAGGTTTTAGACACCTTAACAAGCCGTTTAAGCGATTTGTGTATACAAATCCGTTGCTTGCCTGAATCAGATTGTAAAATGGCTTAGAAGGCAAATATGAGCCTTCTGAGAGGTTTTAGAGATAAGTTAAGCGATTTATGCCGAGAAAACTTTAGTCAGTAAGCTGAAGCGATTTAGACTTAACGTGTCTAGTCGGAAGGCTGAAAGACGAACGACTGGATACGTAGTCAAAAAAAATAGCGAAAGGTTACTTGCTGACTAAAGGAAATTGGAATAAAGGAAGCGGACTTGAAGAAAAAACTATCACGTGCTATAATTAAGTAAAATTTTAAGTAAGTAGGTGAGACT

AT-rich region

The information of repeat sequences

Motif TKAAGCGATTTRTGC

Start	P-value		Site
403	6.34e-09	TAGAGATAAG	TTAAGCGATTTATGC	CGAGAAAACT
441	6.96e-08	GTCAGTAAGC	TGAAGCGATTTAGAC	TTAACGTGTC
304	8.98e-08	AACAAGCCGT	TTAAGCGATTTGTGT	ATACAAATCC
35	1.16e-07	ATATTATGTA	TGGTGCTATTTCTGC	AGCTTTATTA

Motif CGWGBCTWGYSDGA

Start	P-value		Site
460	1.48e-07	TTAGACTTAA	CGTGTCTAGTCGGA	AGGCTGAAAG
240	1.48e-07	ATCATTTAGT	CGAGCGTAGCGACA	AATTCAGATG
328	3.13e-07	TATACAAATC	CGTTGCTTGCCTGA	ATCAGATTGT
374	6.69e-07	AAGGCAAATA	TGAGCCTTCTGAGA	GGTTTTAGAG

Motif GCKGAC

Start	P-value		Site
559	3.89e-05	AATAAAGGAA	GCGGAC	TTGAAGAAAA
530	1.06e-04	AAGGTTACTT	GCTGAC	TAAAGGAAAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000295	100.0	624	0	0	1	624	1	624	1153
pORI00000002	94.631	298	12	4	129	424	343	638	459
pORI00000083	88.889	297	30	3	129	424	353	647	363
pORI00000029	88.552	297	32	2	129	424	353	648	359
pORI00000028	88.552	297	32	2	129	424	352	647	359
pORI00000217	91.099	191	17	0	234	424	336	526	259