DoriC

RefSeq

NC_010907

DoriC accession number

pORI00000084

OriC length

487 nt

OriC AT content

0.6016

The location of oriC region

3177..85 nt

Browse in NCBI

OriC map

OriC sequences

TATAAAAAAGACCTGTTAAGGGTCTTTTTGGGGTGAATTTTGAACGAAGTTAAAAAGAGGGCTGAGAAGCCCTTAGAAACCCATATGACATTATCTTGAGCAAGTGCAACAAAAAACACCTAGGTTCCCCTAGGTGTTTTCTTTATGCTTATATTTCTTGAACTTTTAAGCACCTTCATTGTATCACGTGTAGGAATATGGTGTCAAAAATTGGGTTGGGTGGAGCAATTTTGAGGGGGGATTTTTCGACAGAAAAATCCAGAATCTGGGGGGCTACTACGACCCCCCATATAGTGCCGAGTGCCAATTTCAAAAAAAAACAGGCCTTAGCCTTAGAGCCCCAAGGGTTTAGCGGTTACGAGTTTTCGGCGAGTTTTCGGCGAGTTTTTGGGCGAATTTAGCAAATTCCTCTAAAAAAATACGAAAAACATTGCATTAAATGCGTATTTGTGCTACTATGCTTTTATAAAAATTTGAGAGGTGACTC

AT-rich region

The information of repeat sequences

Motif TTTKGGGBGADTTTWSGAC

Start	P-value		Site
232	2.78e-09	GGAGCAATTT	TGAGGGGGGATTTTTCGAC	AGAAAAATCC
27	8.16e-09	TAAGGGTCTT	TTTGGGGTGAATTTTGAAC	GAAGTTAAAA
363	8.75e-09	CGGTTACGAG	TTTTCGGCGAGTTTTCGGC	GAGTTTTTGG
265	2.40e-08	AAATCCAGAA	TCTGGGGGGCTACTACGAC	CCCCCATATA
386	2.95e-08	TTCGGCGAGT	TTTTGGGCGAATTTAGCAA	ATTCCTCTAA

Motif CCCHTAGADHCCC

Start	P-value		Site
330	7.88e-08	ACAGGCCTTA	GCCTTAGAGCCCC	AAGGGTTTAG
70	1.01e-07	GGCTGAGAAG	CCCTTAGAAACCC	ATATGACATT
286	8.02e-07	ACTACGACCC	CCCATATAGTGCC	GAGTGCCAAT
117	8.15e-07	CAACAAAAAA	CACCTAGGTTCCC	CTAGGTGTTT

Motif AAAANAGGSCTG

Start	P-value		Site
53	4.02e-07	AACGAAGTTA	AAAAGAGGGCTG	AGAAGCCCTT
317	8.93e-07	ATTTCAAAAA	AAAACAGGCCTT	AGCCTTAGAG
4	2.14e-06	TAT	AAAAAAGACCTG	TTAAGGGTCT
207	9.05e-06	TATGGTGTCA	AAAATTGGGTTG	GGTGGAGCAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000084	100.0	487	0	0	1	487	1	487	0.0	900
pORI00000029	95.477	398	10	7	95	487	970	1364	0.0	628
pORI00000028	93.687	396	19	5	95	487	970	1362	0.0	588
pORI00000217	83.668	398	52	10	95	486	848	1238	0.0	363
pORI00000002	92.373	118	5	3	95	210	960	1075	7.36943e-42	165
pORI00000296	94.048	84	3	1	1	82	1	84	3.48e-30	126