DoriC

RefSeq

NC_014562.1

Accession number

NC_014562.1

DoriC accession number

ORI94030322

OriC length

432 nt

OriC AT content

0.546296

The location of oriC region

3437393..3437824 nt

Browse in NCBI

OriC map

OriC sequences

mioCATGGGGCTGGGGATCGCGAAATAGTCACGATCCCCAGTGGAAGATGCTGATTTTATCCTTTTCCGCTCGTTTATTTTGTGGATAACTACCCTATTTTACTGCGTATAACCGGTAGTTATCCAAAGAACAACGGTAGGATGATTTTTGAGCTGTGGATAACATGGCGTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCACTCACAGGTAGTGATCCTCTTCATCCTGTTGTTTCTGCAATGCTTCTGGCACATATCCACAGAAAGCAGGGATCCTAATAAGAGATCTAACAGAAAGATCATATACAGATCTAAGATCCTTTCTTTTAAAACCGGACGATCCCGCGGCTTTCACCCCAGACGGAATTTGAGTAGAATCCACGCCCCAGGACGACGATCCTGCAAGTTCATCAACCGAGGTACCACTTCgidA

miocATGGGGCTGGGGATCGCGAAATAGTCACGATCCCCAGTGGAAGATGCTGATTTTATCCTTTTCCGCTCGTTTATTTTGTGGATAACTACCCTATTTTACTGCGTATAACCGGTAGTTATCCAAAGAACAACGGTAGGATGATTTTTGAGCTGTGGATAACATGGCGTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCACTCACAGGTAGTGATCCTCTTCATCCTGTTGTTTCTGCAATGCTTCTGGCACATATCCACAGAAAGCAGGGATCCTAATAAGAGATCTAACAGAAAGATCATATACAGATCTAAGATCCTTTCTTTTAAAACCGGACGATCCCGCGGCTTTCACCCCAGACGGAATTTGAGTAGAATCCACGCCCCAGGACGACGATCCTGCAAGTTCATCAACCGAGGTACCACTTCgida

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GATCCT

Start	P-value		Site
399	2.54e-04	CCAGGACGAC	GATCCT	GCAAGTTCAT
319	2.54e-04	ACAGATCTAA	GATCCT	TTCTTTTAAA
275	2.54e-04	AGAAAGCAGG	GATCCT	AATAAGAGAT
217	2.54e-04	CACAGGTAGT	GATCCT	CTTCATCCTG
29	4.76e-04	AAATAGTCAC	GATCCC	CAGTGGAAGA

Motif TGNGGATMAC

Start	P-value		Site
151	9.64e-07	ATTTTTGAGC	TGTGGATAAC	ATGGCGTTTT
77	9.64e-07	TCGTTTATTT	TGTGGATAAC	TACCCTATTT
8	1.50e-05	ATGGGGC	TGGGGATCGC	GAAATAGTCA
100	2.19e-05	CCTATTTTAC	TGCGTATAAC	CGGTAGTTAT
189	2.68e-05	CTTATACGGA	TCAGGATCAC	CGATCACTCA

Motif GGAHGA

Start	P-value		Site
392	1.71e-04	CCACGCCCCA	GGACGA	CGATCCTGCA
338	1.71e-04	TTTTAAAACC	GGACGA	TCCCGCGGCT
136	5.59e-04	AACAACGGTA	GGATGA	TTTTTGAGCT
39	5.59e-04	GATCCCCAGT	GGAAGA	TGCTGATTTT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI94030322	100.0	432	0	0	1	432	1	432	0.0	798
ORI96000394	81.585	429	68	11	10	432	424	1	0.0	344
ORI95030438	81.308	428	71	9	10	432	424	1	0.0	339
ORI96000392	81.206	431	66	14	10	432	9	432	0.0	333
ORI93020114	82.407	216	36	2	10	224	9	223	0.0	187
ORI96000411	75.084	297	52	17	107	393	326	42	6.62e-28	119
ORI94030302	75.084	297	52	17	107	393	326	42	6.62e-28	119
ORI92320059	75.084	297	52	17	107	393	326	42	6.62e-28	119
ORI96000438	84.298	121	16	3	107	226	53	171	8.57e-27	115
ORI96000437	84.298	121	16	3	107	226	53	171	8.57e-27	115
ORI96000436	84.298	121	16	3	107	226	53	171	8.57e-27	115
ORI94030301	84.298	121	16	3	107	226	326	208	8.57e-27	115
ORI92720078	84.298	121	16	3	107	226	326	208	8.57e-27	115
ORI92220053	84.298	121	16	3	107	226	326	208	8.57e-27	115
ORI94030300	74.662	296	55	16	107	393	326	42	3.08e-26	113
ORI92720079	74.747	297	53	17	107	393	326	42	3.08e-26	113