RefSeq NC_017554.1
Accession number NC_017554.1
DoriC accession number ORI96000394
OriC length 432 nt
OriC AT content 0.571759
The location of oriC region 77740..78171 nt
Browse in NCBI
OriC map
OriC sequences
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidaGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioc
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
gidAGAAGTGGTACCTCGTTGATGAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGATTCTACTGAAATTATGGCTGAGGTGAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAGATCTTAATTCTTTGTATGATCTTTCTGTTAGATCTCTTATTAGGATCGCCATCTCTTGTGGATATCTGCGAAAAGCACAGGATAAACAAGTGAGTAGAGAGGATCGTTACCTGTTAATGATCGGTGATCCTGATCCGTATAAGCTGGGATCAAAAGAGGACTTTATCCACAGCTCATAAAGTAAACTCCAGTTGTTCTTTGGATAACTACCGGTTATACGCAACTAAACAGGGTAGTTATCCACAAAATAAAAGACCAGATCCGGGGAAAAACAGTATCTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCTGACCGGCmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GGATCGTYATSTNTT

StartP-valueSite
1554.07e-09TCTCTTATTAGGATCGCCATCTCTTGTGGATATCT
2138.59e-08TGAGTAGAGAGGATCGTTACCTGTTAATGATCGGT
885.73e-07GAAAGCAGCGGGATCGACAGGTATTAAAAGAAAAG
4016.10e-07CTTCTGCTGGGGATCGTCGTGATTTCCCGATCCCT
307.01e-07GAATAGTCAGAGATCGTTCTCTCTGGGCCGTGGAT

Motif CCHGATCC

StartP-valueSite
4164.84e-06GTCGTGATTTCCCGATCCCTGACCGGC
2411.19e-05GATCGGTGATCCTGATCCGTATAAGCTG
3681.94e-05AAATAAAAGACCAGATCCGGGGAAAAAC

Motif TTATMCRCA

StartP-valueSite
3493.74e-06AACAGGGTAGTTATCCACAAAATAAAAGA
2753.74e-06AAAGAGGACTTTATCCACAGCTCATAAAG
3261.73e-05TAACTACCGGTTATACGCAACTAAACAGG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000394 100.0 432 0 0 1 432 1 432 0.0 798
ORI95030438 99.537 432 2 0 1 432 1 432 0.0 787
ORI96000392 99.306 432 3 0 1 432 432 1 0.0 782
ORI93020114 99.567 231 1 0 202 432 231 1 0.0 422
ORI94030322 81.585 429 68 11 1 424 432 10 0.0 344