RefSeq NC_013956.2
Accession number NC_013956.2
DoriC accession number ORI93020114
OriC length 231 nt
OriC AT content 0.558442
The location of oriC region 18636..18866 nt
Browse in NCBI
OriC map
OriC sequences
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
miocGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgida
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
mioCGCCGGTCAGGGATCGGGAAATCACGACGATCCCCAGCAGAAGATACTGTTTTTCCCCAGATCTGGTCTTTTATTTTGTGGATAACTACCCTGTTTAGTTGCGTATAACCGGTAGTTATCCAAAGAACAACTGGAGTTTACTTTATGAGCTGTGGATAAAGTCCTCTTTTGATCCCAGCTTATACGGATCAGGATCACCGATCATTAACAGGTAACGATCCTCTCTACTCACgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TGHGGATAAC

StartP-valueSite
769.94e-07TCTTTTATTTTGTGGATAACTACCCTGTTT
1505.75e-06CTTTATGAGCTGTGGATAAAGTCCTCTTTT
991.34e-05CCTGTTTAGTTGCGTATAACCGGTAGTTAT
1882.56e-05CTTATACGGATCAGGATCACCGATCATTAA

Motif YCCCAG

StartP-valueSite
541.63e-04TACTGTTTTTCCCCAGATCTGGTCTT
311.63e-04TCACGACGATCCCCAGCAGAAGATAC
1723.70e-04CCTCTTTTGATCCCAGCTTATACGGA

Motif CAGGKAWCG

StartP-valueSite
73.94e-06GCCGGTCAGGGATCGGGAAATCACG
2086.56e-06CGATCATTAACAGGTAACGATCCTCTCTA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI93020114 100.0 231 0 0 1 231 1 231 0.0 427
ORI96000394 99.567 231 1 0 1 231 432 202 0.0 422
ORI96000392 99.134 231 2 0 1 231 1 231 0.0 416
ORI95030438 98.701 231 3 0 1 231 432 202 0.0 411
ORI94030322 82.407 216 36 2 9 223 10 224 0.0 187