Basic Information

Assembly acc GCF_046736025.1
Acc NZ_CP177166.1
OriID ORI97279252
Organism Dehalococcoides mccartyi
Topology Circular
Lineage Bacteria ; Bacillati ; Chloroflexota ; Dehalococcoidia ; Dehalococcoidales ; Dehalococcoidaceae ; Dehalococcoides ; Dehalococcoides mccartyi
Assembly Level Complete
Literature linkage Not linked
Chromosome size 1322007 nt
Chromosome GC content 47.29%
Indicator genes
  • dnaA      1... 1335nt
  • rpmH      755268... 755408nt
  • dnaN      863134... 864270nt
OriC location
  • 1335 ... 1665 nt
OriC Length
  • 330 nt
OriC AT Content
  • 0.66

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000573
Cluster members 14
Distinct accessions 14
Species / genera 3 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI93010614 NC_013552.1 Dehalococcoides mccartyi VS 100.00% 100.00% Not linked
2 ORI97016134 NZ_CP006949.1 Dehalococcoides mccartyi CG1 99.00% 100.00% Not linked
3 ORI97016340 NZ_CP013074.1 Dehalococcoides mccartyi 99.00% 100.00% Not linked
4 ORI97010658 NC_022964.1 Dehalococcoides mccartyi GY50 87.50% 100.00% Not linked
5 ORI97016113 NZ_AP017649.1 Dehalococcoides mccartyi 87.40% 76.40% Not linked
6 ORI10010023 NC_002936.3 Dehalococcoides mccartyi 195 86.50% 76.40% Not linked
7 ORI97016135 NZ_CP006950.1 Dehalococcoides mccartyi CG4 86.20% 76.40% Not linked
8 ORI97016110 NZ_AP014722.1 Dehalococcoides sp. UCH007 85.30% 76.40% Not linked
9 ORI97016557 NZ_CP019865.1 Dehalococcoides mccartyi 85.00% 76.40% Not linked
10 ORI97016558 NZ_CP019866.1 Dehalococcoides mccartyi 85.00% 76.40% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP177166.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
1 1335 MSIRPAQELWETALGEIELQ...

OriC Visualization

OriC map
OriC sequences
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaaTACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobge
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACCGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTACTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI93010614 100.00% 330 0 0 1 330 1 330 0.0 610.0
ORI10010023 86.91% 252 30 3 77 327 73 322 0.0 279.0
ORI90010302 85.89% 241 31 3 88 327 88 326 0.0 254.0
ORI10010158 85.89% 241 31 3 88 327 88 326 0.0 254.0
ORI93010642 85.54% 242 31 4 88 327 88 327 0.0 250.0
Found 5 BLAST matches
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