Basic Information

Assembly acc GCF_000499365.1
Acc NC_022964.1
OriID ORI97010658
Organism Dehalococcoides mccartyi GY50
Topology Circular
Lineage Bacteria ; Bacillati ; Chloroflexota ; Dehalococcoidia ; Dehalococcoidales ; Dehalococcoidaceae ; Dehalococcoides ; Dehalococcoides mccartyi
Assembly Level Complete
Literature linkage Not linked
Chromosome size 1407418 nt
Chromosome GC content 47.00%
Indicator genes
  • dnaA      259... 1593nt
  • rpmH      865198... 865338nt
  • dnaN      973041... 974177nt
OriC location
  • 1594 ... 1923 nt
OriC Length
  • 330 nt
OriC AT Content
  • 0.6636

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000573
Cluster members 14
Distinct accessions 14
Species / genera 3 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI93010614 NC_013552.1 Dehalococcoides mccartyi VS 87.50% 100.00% Not linked
2 ORI97279252 NZ_CP177166.1 Dehalococcoides mccartyi 87.50% 100.00% Not linked
3 ORI97016134 NZ_CP006949.1 Dehalococcoides mccartyi CG1 87.20% 100.00% Not linked
4 ORI97016340 NZ_CP013074.1 Dehalococcoides mccartyi 87.20% 100.00% Not linked
5 ORI97016110 NZ_AP014722.1 Dehalococcoides sp. UCH007 100.00% 77.00% Not linked
6 ORI97031253 NZ_CP080651.1 Dehalococcoides mccartyi 99.60% 77.00% Not linked
7 ORI97268826 NZ_CP141531.1 Dehalococcoides mccartyi 94.50% 77.00% Not linked
8 ORI97276114 NZ_CP171266.1 Dehalococcoides sp. THU4 94.50% 77.00% Not linked
9 ORI97016113 NZ_AP017649.1 Dehalococcoides mccartyi 93.70% 77.00% Not linked
10 ORI97016557 NZ_CP019865.1 Dehalococcoides mccartyi 92.90% 77.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_022964.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
259 1593 MSIRPAQELWETALGEIELQ...

OriC Visualization

OriC map
OriC sequences
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaaTACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobge
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI93010614 89.02% 328 34 2 1 327 1 327 0.0 405.0
ORI10010023 92.13% 254 19 1 77 330 73 325 0.0 357.0
ORI90010302 84.30% 242 33 5 88 327 88 326 0.0 231.0
ORI10010158 84.30% 242 33 5 88 327 88 326 0.0 231.0
ORI93010642 83.88% 242 35 4 88 327 88 327 0.0 228.0
Found 5 BLAST matches
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