Basic Information

Assembly acc GCF_001889305.1
Acc NZ_CP013074.1
OriID ORI97016340
Organism Dehalococcoides mccartyi
Topology Circular
Lineage Bacteria ; Bacillati ; Chloroflexota ; Dehalococcoidia ; Dehalococcoidales ; Dehalococcoidaceae ; Dehalococcoides ; Dehalococcoides mccartyi
Assembly Level Complete
Literature linkage Not linked
Chromosome size 1521287 nt
Chromosome GC content 46.91%
Indicator genes
  • dnaA      112353... 113687nt
  • rpmH      1001751... 1001852nt
  • dnaN      1144879... 1146015nt
OriC location
  • 113688 ... 114017 nt
OriC Length
  • 330 nt
OriC AT Content
  • 0.6636

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000573
Cluster members 14
Distinct accessions 14
Species / genera 3 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97016134 NZ_CP006949.1 Dehalococcoides mccartyi CG1 100.00% 100.00% Not linked
2 ORI93010614 NC_013552.1 Dehalococcoides mccartyi VS 99.00% 100.00% Not linked
3 ORI97279252 NZ_CP177166.1 Dehalococcoides mccartyi 99.00% 100.00% Not linked
4 ORI97010658 NC_022964.1 Dehalococcoides mccartyi GY50 87.20% 100.00% Not linked
5 ORI97016113 NZ_AP017649.1 Dehalococcoides mccartyi 86.30% 76.40% Not linked
6 ORI10010023 NC_002936.3 Dehalococcoides mccartyi 195 85.70% 76.40% Not linked
7 ORI97016135 NZ_CP006950.1 Dehalococcoides mccartyi CG4 85.10% 76.40% Not linked
8 ORI97016110 NZ_AP014722.1 Dehalococcoides sp. UCH007 84.30% 76.40% Not linked
9 ORI97031253 NZ_CP080651.1 Dehalococcoides mccartyi 83.90% 76.40% Not linked
10 ORI97016557 NZ_CP019865.1 Dehalococcoides mccartyi 83.70% 76.40% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP013074.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
112353 113687 MSIRPAQELWETALGEIELQ...

OriC Visualization

OriC map
OriC sequences
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaaTACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobge
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
dnaATACCTGTAATCCGCTGTTTCTTGCCGCCCCTTCCGCAGTTGATAGTTTCCCCTTAATAACAGGCTGTTTGCCAAACGCTTTTGCCGGTTTTTCTATTATTTTTAGACAGTAGTTCTATAACTTTGTTATATTTTTCGATAACTGGACTAAATTTTCTATAACTTTACGGGAACTCTGCTTTGGAAAACGCACTCTGTGCTTAAAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAAACAAACAAGTTAAAGTTAATGGGATTTCGATAACCGAAGAGTTTGATAACTTTTTAGATAAGGTGTTTTGATobgE
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI93010614 99.09% 330 3 0 1 330 1 330 0.0 593.0
ORI10010023 86.56% 253 29 5 77 327 73 322 0.0 274.0
Found 2 BLAST matches
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