Basic Information

Assembly acc GCF_000011905.1
Acc NC_002936.3
OriID ORI10010023
Organism Dehalococcoides mccartyi 195
Topology Circular
Lineage Bacteria ; Bacillati ; Chloroflexota ; Dehalococcoidia ; Dehalococcoidales ; Dehalococcoidaceae ; Dehalococcoides ; Dehalococcoides mccartyi
Assembly Level Complete
Literature linkage Not linked
Chromosome size 1469720 nt
Chromosome GC content 48.85%
Indicator genes
  • dnaA      261... 1598nt
  • rpmH      948726... 948866nt
  • dnaN      1125734... 1126870nt
OriC location
  • 1599 ... 1923 nt
OriC Length
  • 325 nt
OriC AT Content
  • 0.6862

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000573
Cluster members 14
Distinct accessions 14
Species / genera 3 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97016135 NZ_CP006950.1 Dehalococcoides mccartyi CG4 97.20% 100.00% Not linked
2 ORI97016113 NZ_AP017649.1 Dehalococcoides mccartyi 96.90% 100.00% Not linked
3 ORI97016557 NZ_CP019865.1 Dehalococcoides mccartyi 96.90% 100.00% Not linked
4 ORI97016558 NZ_CP019866.1 Dehalococcoides mccartyi 96.90% 100.00% Not linked
5 ORI97268826 NZ_CP141531.1 Dehalococcoides mccartyi 96.30% 99.40% Not linked
6 ORI97276114 NZ_CP171266.1 Dehalococcoides sp. THU4 96.30% 99.40% Not linked
7 ORI97016110 NZ_AP014722.1 Dehalococcoides sp. UCH007 93.20% 100.00% Not linked
8 ORI97031253 NZ_CP080651.1 Dehalococcoides mccartyi 92.90% 100.00% Not linked
9 ORI97010658 NC_022964.1 Dehalococcoides mccartyi GY50 92.10% 77.00% Not linked
10 ORI93010614 NC_013552.1 Dehalococcoides mccartyi VS 86.50% 76.40% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_002936.3
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Replication Initiation Protein Information

Gene Start Gene End Translation
261 1598 MSVRPAQELWETALGEIELQ...

OriC Visualization

OriC map
OriC sequences
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaaTATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobge
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAGCCCTTTTCGCCGCACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTATTATATTTTTCGATAACCGGGCTGAATTTTCGATAACTTTGCAGATACTTTGCTTTAAAAATAAGACCGGAGGACAGGAATAGAGTTTTTACTCGTAAAGCCTTATTATTAGTATTTCTGATATACTTAAAAATAAACCAGTTAAAGTTAATGGGATTTCGACAACTTAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010023 100.00% 325 0 0 1 325 1 325 0.0 601.0
ORI93010614 86.91% 252 30 3 73 322 77 327 0.0 279.0
ORI90010302 83.66% 257 37 5 69 322 72 326 0.0 237.0
ORI10010158 83.66% 257 37 5 69 322 72 326 0.0 237.0
ORI93010642 83.33% 258 37 6 69 322 72 327 0.0 233.0
Found 5 BLAST matches
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