Basic Information

Assembly acc GCF_001010485.1
Acc NZ_AP014722.1
OriID ORI97016110
Organism Dehalococcoides sp. UCH007
Topology Circular
Lineage Bacteria ; Bacillati ; Chloroflexota ; Dehalococcoidia ; Dehalococcoidales ; Dehalococcoidaceae ; Dehalococcoides ; Dehalococcoides sp. UCH007
Assembly Level Complete
Literature linkage Not linked
Chromosome size 1473548 nt
Chromosome GC content 46.91%
Indicator genes
  • dnaA      259... 1596nt
  • rpmH      848847... 848948nt
  • dnaN      957644... 958780nt
OriC location
  • 1597 ... 1922 nt
OriC Length
  • 326 nt
OriC AT Content
  • 0.6902

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000573
Cluster members 14
Distinct accessions 14
Species / genera 3 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97031253 NZ_CP080651.1 Dehalococcoides mccartyi 99.60% 100.00% Not linked
2 ORI97016113 NZ_AP017649.1 Dehalococcoides mccartyi 94.80% 100.00% Not linked
3 ORI97268826 NZ_CP141531.1 Dehalococcoides mccartyi 95.00% 99.40% Not linked
4 ORI97276114 NZ_CP171266.1 Dehalococcoides sp. THU4 95.00% 99.40% Not linked
5 ORI97016557 NZ_CP019865.1 Dehalococcoides mccartyi 93.80% 100.00% Not linked
6 ORI97016558 NZ_CP019866.1 Dehalococcoides mccartyi 93.80% 100.00% Not linked
7 ORI97016135 NZ_CP006950.1 Dehalococcoides mccartyi CG4 93.50% 100.00% Not linked
8 ORI10010023 NC_002936.3 Dehalococcoides mccartyi 195 93.20% 100.00% Not linked
9 ORI97010658 NC_022964.1 Dehalococcoides mccartyi GY50 100.00% 77.00% Not linked
10 ORI10010158 NC_007356.1 Dehalococcoides mccartyi CBDB1 81.90% 80.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_AP014722.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
259 1596 MSIRPAQELWETALGEIELQ...

OriC Visualization

OriC map
OriC sequences
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaaTATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobge
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
dnaATATTAACCCTTTTCGCCGTACCGCTTTTCCTTATCCTTATATTTTTCTTTATTTTCATTCTGCCAGCAGGGTGCTTTTGCCGGTTTTTCTATTCTTTTTAGACAGTCTTTCTATAACTTTGTTATATTTTTCGATAACCAGGTTGAATTTTCGATAACTTTAAGGGAACTTTGCTTTGAAAATAAGGCCGGAGGACAGGAATAGCGATTTTACTCGTAAAGCTTTATTATTAGTATTTCTGATATACTTAAAAAATAAACTAGTTAAAGTTTACAGGTTTTCGACAACTCAAGAATTAGATAACTTTTTAGATAAGGTGTTTTTATobgE
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010023 93.25% 326 21 1 1 326 1 325 0.0 479.0
ORI93010614 85.77% 253 32 4 73 323 77 327 0.0 265.0
ORI90010302 83.33% 258 37 6 69 323 72 326 0.0 233.0
ORI10010158 83.33% 258 37 6 69 323 72 326 0.0 233.0
ORI93010642 82.95% 258 39 5 69 323 72 327 0.0 228.0
Found 5 BLAST matches
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