DoriC

RefSeq

NC_015756

DoriC accession number

pORI00000506

OriC length

502 nt

OriC AT content

0.6853

The location of oriC region

3334..3835 nt

Browse in NCBI

OriC map

OriC sequences

CGTTATAACGGCTTATTTGCCCGTATAAGCCTTTTTAGCCATGTGACGTAGAAATAATCATTAAATAGATTAAAACGTCGCTATTGGCTTAATAAGTGGCAATCTATGTTAGATAACTAGGTATCCGGCATTTGAAATGATTCAAAACAAAAAGAACACTCTGTACGAAATTTATGTGCACCAGTGTTCTTTTTGTTTTGTTTTTTATTGAATCAATAAAAAGGCGGAGCCTATTATAAGTTTATCTTTTATATTTTAATCTTTTGTTCTTTTGCGCAGTTATAAAGTCAGTATTATCAAGGGTTTACAAGATTATGTACCCACAAAAAACTATGTATACACCCACAAAATACTATGTATACACCCACAAAATACTATGTATACACCCACTTCTCATTTAGATAAGTGGGTGTATAGGTTATAATAAAAAGCATAAAGAAATTCCCGACTAAAAGTTTTTCTTTATACTTATCCAACAACACGCCCAAAGGAGCGTATTTAT

AT-rich region

The information of repeat sequences

Motif YARAWWACTAKGTATACASC

Start	P-value		Site
324	3.81e-11	TATGTACCCA	CAAAAAACTATGTATACACC	CACAAAATAC
368	1.01e-10	TATACACCCA	CAAAATACTATGTATACACC	CACTTCTCAT
346	1.01e-10	TATACACCCA	CAAAATACTATGTATACACC	CACAAAATAC
110	1.28e-09	CAATCTATGT	TAGATAACTAGGTATCCGGC	ATTTGAAATG
399	1.26e-08	ACTTCTCATT	TAGATAAGTGGGTGTATAGG	TTATAATAAA

Motif GCGSAG

Start	P-value		Site
224	2.77e-05	CAATAAAAAG	GCGGAG	CCTATTATAA
274	5.92e-05	TTGTTCTTTT	GCGCAG	TTATAAAGTC

Motif KCCCRWATAARMSTWTTT

Start	P-value		Site
19	4.14e-10	CGGCTTATTT	GCCCGTATAAGCCTTTTT	AGCCATGTGA
483	4.58e-10	CCAACAACAC	GCCCAAAGGAGCGTATTT	AT
443	8.37e-09	ATAAAGAAAT	TCCCGACTAAAAGTTTTT	CTTTATACTT

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000506	100.0	502	0	0	1	502	1	502	928
pORI00000982	89.526	506	44	7	1	502	501	1	632
pORI00000425	84.449	508	65	14	1	502	1	500	488
pORI00000843	81.336	509	81	9	1	502	1	502	401
pORI00000260	79.839	496	80	16	12	502	12	492	344
pORI00000482	77.953	508	95	11	1	502	1	497	302
pORI00000787	77.886	511	90	17	1	502	1	497	296
pORI00000786	77.886	511	90	17	1	502	1	497	296
pORI00000511	77.886	511	90	17	1	502	1	497	296