DoriC

RefSeq

NC_014133

DoriC accession number

pORI00000482

OriC length

497 nt

OriC AT content

0.6901

The location of oriC region

13387..13883 nt

Browse in NCBI

OriC map

OriC sequences

CGTTAAAACGGCTTATTTGCCCGTATAAGCGTTTTTAAACACGCAACGTATAAATAAGTATTAACCAATTTTGAATGGCTCTATCGGCTTAATAAGTGGCAATCATATTAGATAACAAGTGATATGTCATTTAAATTCATTCAAAAAAGAACCCCACGTACAAAATTGACGTACTATGGGGTCTTTTTGTTTTGTTTTTTATGGGTTCAATAAAAAGGCGCAGCCTATTATAAGTTTATCTTTTATATTTTAATCTTTTGTTCTTTTGCGCGGGTGTAAAGTGAGCTTTATCAGTACTTTAAAGCTAGATACGTGTAGAAAAAACTGTGTATACGTGTAGAAAAAACTGTGTATACGTGTAGAAAAAACTGTGTATACGTGTAGTTTTTTTAGAAAAAACTACACTATAAATGATATAATAAAAAGCATAAAGAAATCCCCGACAAAAAGTTTTTCTTTATGCTTATCCAACAACACACCCAAAGGAGTGTATTTAT

AT-rich region

The information of repeat sequences

Motif AACTGTGTATACGTGTAG

Start	P-value		Site
367	2.11e-11	GTGTAGAAAA	AACTGTGTATACGTGTAG	TTTTTTTAGA
345	2.11e-11	GTGTAGAAAA	AACTGTGTATACGTGTAG	AAAAAACTGT
323	2.11e-11	GTGTAGAAAA	AACTGTGTATACGTGTAG	AAAAAACTGT
301	9.26e-10	TCAGTACTTT	AAAGCTAGATACGTGTAG	AAAAAACTGT

Motif TSCSCG

Start	P-value		Site
18	2.91e-05	ACGGCTTATT	TGCCCG	TATAAGCGTT
437	5.46e-05	CATAAAGAAA	TCCCCG	ACAAAAAGTT
267	8.77e-05	TTTGTTCTTT	TGCGCG	GGTGTAAAGT

Motif AAAVACSCAACGTA

Start	P-value		Site
37	5.03e-09	AAGCGTTTTT	AAACACGCAACGTA	TAAATAAGTA
147	2.22e-07	TCATTCAAAA	AAGAACCCCACGTA	CAAAATTGAC
214	3.32e-07	GGTTCAATAA	AAAGGCGCAGCCTA	TTATAAGTTT
474	3.55e-07	TTATCCAACA	ACACACCCAAAGGA	GTGTATTTAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000482	100.0	497	0	0	1	497	1	497	918
pORI00000843	81.729	509	74	12	1	497	1	502	407
pORI00000787	81.548	504	79	12	1	497	1	497	403
pORI00000786	81.548	504	79	12	1	497	1	497	403
pORI00000511	81.548	504	79	12	1	497	1	497	403
pORI00000506	77.953	508	95	11	1	497	1	502	302
pORI00000982	77.821	514	84	24	1	497	501	1	291
pORI00000425	77.03	505	103	12	1	497	1	500	278
pORI00000260	76.621	509	90	27	1	497	1	492	254