DoriC

RefSeq

NC_016828

DoriC accession number

pORI00000511

OriC length

497 nt

OriC AT content

0.7123

The location of oriC region

13078..13574 nt

Browse in NCBI

OriC map

OriC sequences

CGTTAAACCGTCTTATTTGCCTGTCTAAGCATTTTTAGACACAAAACGTATAAATAATCATTAACCAAGTTAAAATAGCTCTATCGGCTTATTAAGGGGCAATAATATTAGATAATAAGGGATATATCCATGAAAATCGTTCAAAAAGAACCCTACGTACAAAATTGACGTACGATGGGGTTCTTTTTGTTTTTTTTTTTTATGGGTTTAATAAAAAGGCGGAGCCTATTATAAGTTTATCTTTTATATTTTAATCTTTTTTTCTTTTGCGTGGTTAGAAATCCACTAATAACAAGGGTTTAGTGGACAATATAAGTACAAAAAACTATGTACATAAGTACAAAAAACTATGTACATAAGTACAAAAAACTATGTACATAAGTACTTTTTTAAAACATAAGTACGTATGTTTTGATATAATAAAAGCATAAAGAAATTCCCGACTAAAAGTTTTTCTTTATGCTTATCCAACAACACGCCCAAAGGAGCGTATTTAT

AT-rich region

The information of repeat sequences

Motif GTWCAAAAAAMTATGTACRTA

Start	P-value		Site
360	1.50e-11	ATGTACATAA	GTACAAAAAACTATGTACATA	AGTACTTTTT
338	1.50e-11	ATGTACATAA	GTACAAAAAACTATGTACATA	AGTACAAAAA
316	1.50e-11	GACAATATAA	GTACAAAAAACTATGTACATA	AGTACAAAAA
139	4.68e-09	CATGAAAATC	GTTCAAAAAGAACCCTACGTA	CAAAATTGAC
387	2.14e-08	CATAAGTACT	TTTTTAAAACATAAGTACGTA	TGTTTTGATA

Motif SACKTAYDAWGGRGY

Start	P-value		Site
167	4.88e-09	GTACAAAATT	GACGTACGATGGGGT	TCTTTTTGTT
475	9.43e-09	TATCCAACAA	CACGCCCAAAGGAGC	GTATTTAT
86	2.81e-08	TAGCTCTATC	GGCTTATTAAGGGGC	AATAATATTA

Motif TTTTTTTTTWTGSKT

Start	P-value		Site
258	2.59e-08	ATTTTAATCT	TTTTTTCTTTTGCGT	GGTTAGAAAT
193	4.88e-08	CTTTTTGTTT	TTTTTTTTTATGGGT	TTAATAAAAA
451	8.40e-08	CGACTAAAAG	TTTTTCTTTATGCTT	ATCCAACAAC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000787	100.0	497	0	0	1	497	1	497	918
pORI00000786	100.0	497	0	0	1	497	1	497	918
pORI00000511	100.0	497	0	0	1	497	1	497	918
pORI00000843	82.505	503	81	5	1	497	1	502	435
pORI00000482	81.548	504	79	14	1	497	1	497	403
pORI00000982	81.349	504	84	9	1	497	501	1	401
pORI00000506	77.756	508	96	14	1	497	1	502	296
pORI00000425	78.63	365	58	15	142	497	147	500	224